Erigeron canadensis (horseweed): 122590214
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Entry
122590214 CDS
T07610
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122590214
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122590214
Membrane trafficking [BR:
ecad04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
122590214
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122590214
Exosomal proteins of bladder cancer cells
122590214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Aa-Ago_N
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
122590214
NCBI-ProteinID:
XP_043618483
LinkDB
All DBs
Position
2:complement(40206844..40214203)
Genome browser
AA seq
1215 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKSVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDSKAWE
VDTLRGHMNNVSSVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILGCHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSLYYVKDRFLRFYEYSTQKDTQIIPIRRPG
SASLNQGPRTLSYSPTENAILICSEVDGGSYELYIIPKDSFTRGDTVQEAKRGVGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSAIPVVTDAIFYAGTGNLLCRSEDRVIIFDLQ
QRLVLGDLQTSFVRYVVWSNDMESVALLSKHSIIIADKRLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDCGIIKTLDVPVYITKIYGNTIFCLDRDGKNRSIAIDATEYL
FKLSLLKKRYDHVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLSK
MMKIAEVKNDVMGQFHNALYLGDVRERIKILENAGHLPLAFATAKAHGLIDIAEDLATKL
QDNVPTLPSGRSTSLLMPPTPVLCGGDWPLLRVMKGIFEGGLDNAGKGGQEEYEDAADAD
WGEDLDIVDSENIQNGVINMEPDDEEAHEDSEEPGWDLEDLELPPDVETPKASTARTSVF
VAPTPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLNRQLGIKNFTPLKSLFIDLHMGSH
TYLRAFTSAPLIALAIERGWSESASPNVRSPPALVFNFSQLEDKLKAGYKATTAGKFTEA
LRLFMGILHTIPLIVVESRREVDEVKELVIIVKEYVLGLQLELKRRELKDNPVRQQELAA
YFTHCNLQLPHLRLALMNAMTVCFKAGNLITASSFARRLLETNPPENHGQKARSVIQAAE
RNMKDSTQLNYDFRNPFVTCGATYVPIYRGQRDVLCPYCTSHFVVSQEGELCAVCNLSVV
GSDASGLLCSTAQIR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgaaacaaagagtaatagagtgaaaggattgagtttccatagcaag
agaccatggatcttagctagtcttcatagtggagtcatccagctatgggattaccgaatg
ggcacactcattgatcggttcgacgagcacgacgggccggttcgcggtgtgcattttcat
aaatcgcagccgttgttcgtctctggaggagatgattataagatcaaagtatggaactac
aaattgcataggtgtttgtttacacttcttgggcatcttgattacatccgaacagttcaa
tttcatcacgagtctccctggattgttagtgctagtgatgatcaaactataaggatctgg
aactggcaatctcgtacctgtatatctgttttgacaggacacaatcattatgtgatgtgt
gctttgttccatccaaaggaggaccttgttgtgtcggcgtcattagatcagactgttagg
gtatgggatattggtgcactgaggaagaaatctgtgtctcctgctgatgacattctgcga
ttgagtcagatgaatacagatttttttggtggtgttgatgccgttgtaaagtatgtcttg
gagggccatgatcgtggagtcaattgggcttcattccatcccactctccctcttattgtc
tcgggtgctgatgatcgccaagttaagatctggcgaatgaatgattcaaaagcttgggaa
gtagacactttgagaggtcacatgaacaatgtttcatctgttctttttcattcaaggcag
gacattatcgtatcaaactcagaagataaaagtatacgtgtttgggatgctacaaaaagg
acaggccttcaaacttttcgacgtgaacatgaccggttctggattctcgggtgccatcct
gagatgaaccttctggctgctggccatgatagtggcatgatagttttcaagttggaaagg
gagcgcccagctttctctgttagcggtgattctttatattatgtcaaagaccgttttctg
cggttttacgagtactcaactcagaaagacacccaaataataccaatccgcaggcctggt
tctgccagcttgaaccagggtcctagaacgctttcttatagccccactgaaaatgctatt
ttgatatgctcagaggtagatggaggatcttatgaactctatatcataccgaaagatagc
ttcaccagaggtgatacagtccaagaggcaaaaagaggtgttgggggatcagcagttttt
gtagcccgaaataggtttgcagtgcttgagaagagcaccaatcaagtgttagtcaagaac
ttgaaaaatgaaatagtaaagaagagtgccattccagttgtaactgatgcaatattttat
gcgggtacaggtaacttactctgcaggtcagaggacagggttattatatttgaccttcaa
caacgactggttctgggagaccttcaaacttcttttgtaaggtatgtagtgtggtctaat
gacatggagagcgttgctttgctcagcaaacattcaataatcattgctgataagagactt
gtacaccgctgcacccttcatgaaacaatccgtgttaaaagtggatcatgggatgataat
ggtgtatttatatacacaaccctaacccacattaagtattgtttgcctaatggggactgt
ggaattatcaaaacacttgatgttcctgtatacattacaaaaatatatggaaacacaata
ttctgcttggaccgagatggcaaaaaccgctctatagctattgatgcaactgaatatctc
ttcaagctgtctttactgaagaagagatatgatcatgttatgagtatgataagaaactca
gagctatgtgggcaggccatgattgcatatcttcagcaaaaagggtttccggaggttgct
ctccattttgtgaaagatgaaagaacccgcttcaatttagcacttgaaagtggaaacatt
caaattgccgttgcttctgctaaagagattgatgaaaaggatcactggtatagattgggt
gttgaggcccttcgtcaggggaatgcaggtattgttgagtacgcgtatcagagaactaag
aactttgagaggctatcattcctgtatctgattacaggaaatttggacaagttatccaaa
atgatgaaaattgcagaggtgaaaaatgatgttatgggtcagtttcacaatgctttgtac
ctaggagatgtccgagagcgaattaagattttagagaatgcgggtcatctgccactagct
tttgctacagctaaagcccatgggttaattgatattgctgaggatcttgccacaaaactt
caagataatgttccaactttgcctagtggtaggtccacttctctattaatgccaccgact
cctgtcttgtgcggtggagactggcccttactaagggtcatgaaagggatctttgagggt
ggtcttgataacgcggggaaaggtggacaggaagagtacgaggatgctgcagatgccgat
tggggtgaggatttggatattgtggattcggagaacattcagaatggtgtcatcaacatg
gaaccggatgatgaggaagcacatgaagatagtgaagagccaggttgggatcttgaggat
cttgaacttccccctgatgttgaaacccccaaagcctccactgcgaggacatcagtattc
gtggcgcctacacctggcatgcctgtgagccaaatttgggtccaaaaatcatctttagcg
gctgaacatgcagcagcaggaaactttgacaccgcaatgcggttgctaaaccgacagctg
ggaataaagaatttcacacccttaaaatcgttattcatcgaccttcatatggggagtcat
acttacctgcgtgctttcacatcagctccgctaatcgcattggctattgagagaggctgg
agtgaatcagcaagccctaatgtccggagcccacctgcactcgtgttcaacttttcacag
ttggaagacaaactcaaggctggttacaaagccaccactgctgggaagttcactgaagct
ttaaggctttttatgggtattctccatactattccactgattgtagtcgagtcaaggaga
gaagtggatgaagttaaagaattggtgattattgtgaaggagtatgttttaggtttacag
ttggaacttaaaaggagagaattaaaagacaaccctgttcgtcaacaggagttggcagct
tactttactcactgtaaccttcagctgcctcatctgagactagctttgatgaatgcaatg
actgtgtgtttcaaagcgggtaatctcatcacagcatcgagctttgctaggcgtctgttg
gagaccaatcctcctgaaaaccatggtcaaaaggcgcggtcagttatacaggcagctgag
aggaacatgaaggactccacacagctgaattatgactttagaaatccgtttgtaacttgt
ggagcgacttatgttcctatttaccggggacagagggatgtgctttgtccctactgcact
tcgcattttgttgtttcccaggaaggggagctttgtgcagtctgtaacctgtcggtggtt
ggatctgatgcatctgggttactttgctccacggcacagattagatga
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integrated database retrieval system
