Erigeron canadensis (horseweed): 122590829
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Entry
122590829 CDS
T07610
Name
(RefSeq) DNA polymerase zeta catalytic subunit
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122590829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122590829
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122590829
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
122590829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
POL3_N
REV3_N
zf-C4pol
DNA_pol_B_exo1
divDNApol
Motif
Other DBs
NCBI-GeneID:
122590829
NCBI-ProteinID:
XP_043618935
LinkDB
All DBs
Position
3:24844162..24857588
Genome browser
AA seq
1755 aa
AA seq
DB search
MEESSQGTSKIFSVRIVSIDYYMSPPIPDLDFSYSSFQGGKVNEVPVIRVYGSTPAGQKT
CLHIHRALPYLYVPCSDIVQQPELEGDTCVRVISYALEKALKLKGSAGSKRQHVHGCSLV
RARRFYGYDASEQLFAKLYLYHPQDVSRAANLLLSGSVLEKSLQPHESHIPFLLQFLIDY
NLHGMGHLHVSKIKFRHPVPHVCTKQKQKTNYDPQHKQQTNESFIATVSQADSSVNVCLE
SPIWLLSTIPDTWIWHFPSQDPEYNPAKRQSVCELEGDSAIDDIFNQQSKLYSSLSQTLS
DARMVQSLIPIWEEFEKTGMNMETMSSDPGKPSPHNVLNTLSNKAEFEVKLLELCNTENS
SPCTPVKPNKMFSQSIRSSSDGKDMVERGYANLEKESSKHLQTSNHTTLLLSQDSQCRYT
AEDPEALRLLNWLASSQAAEDINSDDELRRETILSPMMPATTINEVLEKADLEFVNASQQ
ECQDILDSVQVSTDIEGKAQSKSKNESSSHLLSMKEIPQVDGSGDSKKLIHHTGKTSKIE
KSKERVKLASGSSVNIKHKRKGLQWSSLPFCLSESMNDGQTSDFKGGRCESDLKTDTEAC
AGSTSVGCSVRDLMRRKRCNRGESPKVEMHYDVKGTPEEECNNIYSSSKQRSDQENISSP
TDSRSGCSFSGDQQDITPPISYNMLYGSPPVSSSPTLTLEGCAPAVGYKTEKIVDDKGTD
KQPSFIDENDEEDKHPKSTMDGSIRHQGQGMGALTNYHSDGSRLYMLTPAIIPPSRDDVN
KWLLHDGVSRENINASAEDSSSPKGSLRHDMDPLDISAKPVMDSGSTSSIKPHLDHVKEF
GLERHVMKPKKCSPGMSAISQDISQISGPEGKKLTPLSQAGFRDPASIGAGQQLTTFSIE
VHADSRGDLRPDPRFDAVNFIAVVIEEDDNFAINSYVLLRGEMTTVRRNLEGITGCKLIV
CTQEKHLFSEFVKIICYHDPDILMGWDIQGGSLGFLAERAAFIGIGLLNEVSRIPSQPIL
NTGILDIPDKEMMSDVIPEALNPENDLPNETIIEDEWGRTHASGVHVGGRIVLNLWRLVR
SEVKLNMYTAEAVAEAVLRRKIPYIHCRTLTKWFASGPGKARYRCIEYVLDRARLNFQVM
NQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLVRLAHTQNYLAISPGTQQVACQPA
MECLPLVMEPESGFYADPVVVLDFQSLYPSMVIAYNLCFCTCLGKVTPSKPNTLGVSSYT
PDPNVLCELKNEVLLTPNGVMYVPSKVREGVLPRLLNEILSTRIMVKQAMKKLSPSDKVL
YRIYNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRRTLENAILLVNTHDKW
KAKVIYGDTDSMFVLLPGRSVSEAHQIGNEIASAVTKMNPNPVVLKMEKVYHPCFLLTKK
RYVGYSYEKPDQVKPVFDAKGIETVRRDTCAAVSKTMEHSLRNYFETQDISKVKLYLLRQ
WSRILSGRVSIQDFIFAKEVRLGTYSSRVSSLPPSAIVATKAIRADPRAEPRYAERIPYV
VVHGEPGARLADMVVDPMELLTVDSPFRLNDLYYINKQIIPALQRVFGLVGVDLKQWFLE
MPRPVREFVGKNQSYGPNSHRTRIDYYYLSKHCIMCGELVQASAAPLCTKCSRNEAAVAV
AVTGRTSKIEREIQHLAAICRHCGGGDSILESGIKCTSLACSVFYERQKVQKELRSLSNI
ATESGFYPKCMAEWF
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcctcacaaggaacttcaaaaatattcagtgttagaatagtatcaattgat
tactatatgtctcccccaattccagaccttgatttttcttacagtagctttcaaggtggg
aaggtgaatgaggttcctgtgattagagtgtatggatcgacaccggctggtcagaagact
tgtttgcatattcatcgagctttgccatatctatatgttccttgttcggatatagttcag
caaccggagttggaaggtgatacttgtgtgagagtgatatcttatgctcttgagaaggca
ctgaagctcaaaggtagtgctggttcaaaacggcagcatgtgcatggctgcagtcttgtc
cgtgcaagaaggttttacggttatgatgcatctgagcaactattcgcaaagctctacctg
tatcatccacaggatgtctctcgcgcagcaaatcttcttttgagtggttcagttctcgag
aagagtttgcagccccatgaatcgcatattccatttcttctccagttcctgattgattat
aacttgcatggcatgggacacctacatgtatcaaagataaagttccgccatccagtaccg
catgtttgtacaaagcagaagcagaagacaaattacgatccccaacataagcaacagaca
aatgagtcttttatagccactgtctctcaggcagattcaagtgttaatgtttgtctagag
tcaccaatctggctgttatccactattccagacacttggatttggcatttccctagtcaa
gatccagagtataatcctgctaaacgtcagagcgtctgtgaacttgagggagattctgct
attgatgatatttttaaccagcaatctaagctgtactcatcactgtcacaaaccctttca
gatgctagaatggttcagtcactcattccaatttgggaggaatttgagaagactggaatg
aatatggaaactatgtcatctgatccaggaaaacctagtccgcataatgttttgaatact
ttgtcaaataaagcagagtttgaagtcaaactattggaattgtgcaatacagaaaattct
tcaccatgtactccagtcaagcctaacaaaatgttctcacaatctataagatcttccagt
gatggaaaagatatggttgaaaggggatatgccaaccttgaaaaagaaagcagcaaacat
ttacagacatcaaatcatactacacttctgttatcacaagattctcaatgtcgctatact
gcagaagatcctgaggctttgaggcttttaaactggctagcatcttctcaagctgcagaa
gatataaactcggatgatgaacttagaagggaaaccattttaagcccaatgatgcctgca
acaactattaacgaggtgcttgaaaaagctgatttagaatttgtaaatgcatcccaacaa
gagtgtcaagacatccttgattctgttcaagtttcaacagatatagaaggtaaagctcaa
agtaaaagtaaaaatgagtcgtcttctcatctattatcaatgaaagagattcctcaagtg
gatggctctggggatagtaaaaaactgatccatcacactggcaaaacatctaagatagag
aagagcaaagaacgagtgaagcttgcttctggatctagtgttaacataaaacacaaaagg
aagggtctccaatggagctctttgccgttttgtttgtccgagagtatgaatgatggtcaa
acatcggatttcaaaggtggtagatgtgaaagtgatttgaaaactgatacagaagcttgt
gctggaagtacaagtgttggatgctcagtgcgggatcttatgaggagaaagcgttgtaat
cggggcgagtctccaaaagttgaaatgcattatgatgtaaagggtacaccagaggaggaa
tgtaacaatatatattcctcttctaaacaaaggagcgatcaggaaaatatcagctctcct
accgattccagatcagggtgttctttttctggtgatcagcaagacatcactccgcctatc
agttacaacatgctatatggatcccctccagttagttcatcaccgacacttacactggaa
ggttgtgctcctgcagttggatataagactgaaaaaatagttgatgataaaggcactgat
aagcagccttcattcattgatgagaatgatgaagaggataaacaccccaagtctacaatg
gatggctccattcgtcatcaaggacaaggcatgggtgcacttacaaactatcatagtgat
ggctcccgtctgtacatgttaacacctgcaattatacccccatcaagagatgatgttaat
aaatggctgcttcatgatggtgtatcgagagagaatataaatgcatcagcagaagattct
tcttcaccaaagggttctcttcgccatgacatggatccactagatatttctgctaagcct
gtcatggactcaggctcaacgtctagcattaaacctcatctggatcatgtaaaggagttt
ggcctggaacgccatgttatgaaaccaaaaaaatgttctcctggtatgtcagcaatatca
caagatatctctcagatatcgggtcctgaaggaaaaaagctgactcctttgagtcaagca
ggctttagggatcctgcaagtattggtgcaggacagcagctgacgacgtttagcatagag
gtccatgcagattctaggggagatttgagacctgacccacgatttgatgccgtcaatttc
atagcagttgttatcgaggaagatgataattttgcaatcaatagctatgttctcttgcgc
ggtgagatgacaactgttagaagaaatctggaaggtataactggttgcaagttgatagtt
tgcacccaagagaagcatttgttcagtgagttcgtgaaaattatatgctatcatgatcca
gatattctaatgggctgggacattcaaggtggttcacttggtttcttagctgaaagggct
gcatttattggaattggattgcttaatgaagtatcccgcataccatctcaacctatttta
aataccggaattttagatatcccagataaagaaatgatgagtgatgtgatccctgaagca
ttaaatcctgaaaatgatctgccaaatgaaacaataattgaggacgagtggggccgaact
catgcaagcggtgtccatgttgggggtagaattgtccttaatctttggcggctcgttcgt
agtgaggttaagcttaatatgtacacagctgaagcagtggcagaagcagttcttagaaga
aaaattccatatattcattgtagaacactgacaaagtggtttgctagtggtcctggaaaa
gcaagatatcgttgtatagagtatgtgttggacagggcaaggttaaactttcaagtgatg
aaccaacttgatatgataaacaggacatctgagcttgctcgtgtatttggtatcgatttc
ttttctgttctttccagaggttcccagtaccgtgtggaatctatgttagtgagattggca
cacacacaaaattatcttgcaatttctcctggaacccaacaggttgcatgccaacctgct
atggaatgcttgccacttgttatggagccagaatctgggttctatgcggatccagtcgtt
gttttagattttcaatctctgtatccatcaatggtcatagcttataatctctgcttctgt
acatgccttggaaaggttacaccttcaaagccgaatacgcttggtgttagttcatataca
ccagacccaaatgttctgtgtgaattgaagaatgaggttctacttactcccaatggtgtt
atgtatgtgccttcaaaggtccgagaaggtgtactacctcgtttacttaatgaaatatta
tcgacacgaattatggttaagcaggcaatgaagaagttgtctccatccgataaagtactt
tatcggatctataatgcaagacagcttgcgttaaagctaatagcaaatgtgacctatggg
tatacagctgctggttttagtggtcgcatgccttgtgctgaactggcagacagtatcgtt
cagtgtggtcgtagaacacttgaaaatgcaattttacttgtgaacacacatgataagtgg
aaggctaaagttatatatggtgatactgatagcatgtttgtgctcctcccaggacgttct
gtgagtgaagcccaccaaattggaaacgagattgcatcggcagtaaccaagatgaatcct
aatccagtggtattgaaaatggagaaggtctaccatccctgctttcttcttacaaagaag
aggtatgtcgggtacagttatgaaaagcctgaccaagtcaaaccggtcttcgatgctaaa
ggtatcgagacagtacgaagagatacatgtgcggctgtatccaagacgatggaacattca
ttgagaaactattttgaaactcaggatattagtaaggttaaactgtacttgctacgtcaa
tggtcgcgtatattgtcaggccgggtttcaattcaggattttattttcgcgaaggaagtt
cgtttaggaacctacagctcacgtgtttcttcccttcctccatctgcaatagtagctacc
aaagctataagagctgatcctcgggctgaaccacggtatgcagaacgaataccttacgtg
gtggttcatggtgaacctggtgcacgattagctgatatggtggtcgatccaatggaactc
ttgacagtcgattcaccttttagattaaacgacttgtattatatcaacaaacagataatt
ccagccttacagagggtatttgggctcgtaggtgtcgacttaaaacaatggtttctggaa
atgccacgtccagttagagagtttgttgggaaaaaccagtcttatggaccaaattctcac
cggaccagaattgattactattatctctctaaacactgcatcatgtgcggggagttggtt
caggcatctgctgcacctttatgtaccaagtgttcaagaaatgaagctgctgttgcagtg
gctgttactggaaggacatctaagattgaaagagagattcaacaccttgctgctatatgc
cggcattgtggaggtggggattcaattttagaaagcggcataaaatgtacgtcactcgcc
tgctctgtcttctatgaaaggcaaaaggtacaaaaagagttgcgatctctttctaacatt
gccacagaatcaggtttttaccccaagtgtatggcagagtggttctaa
DBGET
integrated database retrieval system
