Erigeron canadensis (horseweed): 122591003
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Entry
122591003 CDS
T07610
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122591003
Membrane trafficking [BR:
ecad04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
122591003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_VPS8
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
Motif
Other DBs
NCBI-GeneID:
122591003
NCBI-ProteinID:
XP_043619116
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All DBs
Position
3:42173042..42186719
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AA seq
1102 aa
AA seq
DB search
MYMAYGWPQVIPLESGLCPTSQQIIYLKVVDRLFLVVCPSHLELWSSSQHRVRLGKYKRG
PDSIAREGENLRAIWSPDTKLIAVLTSSFYLHIFKVQFSEKKIHIGGKQPSNLSFATISL
LMSEVVPFPGKDLTVSNIICDNKNLLVGLSNGTLYNMSWKGEFYGSLDLDFHLCNANGHT
KLSNGVVSSSHSLSRKSAVTYMEFSLRLKLLFVLFSDGQLVLCSVSKRGLKQSDSVNPEY
RLGSDDAVCASIAPDQQILAVGTRRGVIELYEIGEPVSLIRSVSLHDWGYSMDDTGAVSS
IAWTPDSSAFAVGWKSRGLTVWSISGCRLMSTIRQIGLNSASSPGVKQNPDGNYEPLMSG
TSFMQWDEYGYRLYAVEEGSSERILAFSFGKCCLNRGVSGKTHSRQVIYGEDRLLVVQPE
DTDELKLMHLNLPVSYISQNWPVLHVAASEDGMYLAVAGLHGMILYDIRLNRWRFFGDVT
QEQKIQCTGLLWMGKIVVVCNYVESSDMYELLFYPRYHLDQSSLLYQKPLLAKPMVMDVY
NDYLLVTYHPFDVHIYHVKVSGDLTPSSTPDIQLSTVRELSIMTAKCHPAAMHFIPDQLE
SDPSSKEIISSSDSLEKEPIRCLILRANGELSLLDLIDGRERELTDSIELFWVTCGRSGD
KTNLIEEVSWLDYGHRGMQVWYPSSGLDPYKQEEFLQLDPELEFDREVYPLGLLPNAGIV
VGITQRLSFSACTEFPCFEPSPQVQTILHCLLRHLLQRDKSEEALQLARLSEEKPHFSHC
LEWLLFTVFEAEISSQNASKDSPSLLEKTCDLIKKFPEYFDVVVSVARKTDGRHWADLFS
AAGRSTELFEECFQRRWYQTAACYILVIAKLEGAPVSQYFALRLLQATLNESLYELAGEL
VRFLLRSGREYEPTTTDSDKLSPRFLGYFRFPSGKRLSSDARSPSFKEQNAHVASVKNIL
ESHASYLMSGKELSKLVSFVKGTQFDLVEYLQREKYGSARLENFASGLELISQKLQMGTL
QNRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLIDLFRHDMRLWKAYSATLESHPSFS
EYHDLLGALGEKLSSNEITEEA
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcgtacggatggccgcaggtgatcccactggaatcaggattgtgtcctact
tcacagcagatcatatatcttaaagttgttgatcggttatttctcgttgtttgcccttct
catttagagctctggagctcttctcagcatagggtgaggttagggaagtataagcgaggt
ccagattcaatagcaagagagggagagaacttgcgggctatctggagccctgatactaaa
ttaattgctgttcttacatcttcattctatcttcacatttttaaagtccaattttctgag
aaaaaaatacacataggaggaaaacaaccttctaatctgtcttttgcaactatttctcta
cttatgagtgaagtggtcccctttccaggcaaggacttgacagtgagcaatattatttgc
gacaacaaaaacttgctggtcggactttcaaatggaactttatataatatgtcttggaag
ggtgagttttatggatccttggatctggacttccatttgtgtaatgcaaatggccataca
aaattgtccaatggcgttgtatcatcaagtcattctttgtctagaaagtcagccgtcact
tatatggagttttcgttgcgcttgaagctgttattcgttctgttctcggatggacaattg
gtgttatgttctgtaagcaagcgaggtttaaagcaatctgattctgttaaccctgagtat
cgattggggtccgatgatgcagtatgtgcttcaattgcaccagaccaacaaattcttgct
gttggcaccagaagaggtgtcattgagctgtatgaaattggtgaacccgtatcgcttatt
cgttctgtatctttacatgattgggggtattcaatggatgatactggtgcagttagttct
attgcatggacacccgacagttctgcctttgcagttgggtggaagtcaagaggactaaca
gtgtggtctatatctggttgccgtttaatgtctacaattcgtcagattggtttaaattct
gcgtcttctccgggggttaagcaaaatccagatggcaattatgaaccattaatgagtggt
acctcatttatgcaatgggatgaatatggatatagactctatgctgttgaagagggttct
tcagagagaatacttgcattttcttttggtaaatgttgcctcaacagaggggtttcaggc
aaaactcattcccgccaagtaatctatggcgaagatcggttacttgttgtgcagcctgag
gatacagatgaactcaagttgatgcatcttaaccttccagtctcctatatctcccaaaat
tggccggttcttcatgtggctgctagtgaagatgggatgtatctagctgttgctggactt
catgggatgatattatatgacattcgattaaatagatggagattttttggtgatgttacc
caagaacaaaaaattcaatgcacaggcttgttatggatggggaaaattgttgttgtttgc
aactacgtcgagtcatcagacatgtacgagttgctcttctacccaagatatcatcttgat
cagagttcacttctctatcagaaaccattgcttgcaaaacccatggtgatggatgtctat
aatgactatttacttgtcacctaccacccatttgatgtccatatatatcatgtgaaggta
tctggtgacttgactccttctagtacaccagatatacagctttctacagtacgagagcta
tccatcatgactgcaaagtgccatcctgctgcaatgcattttatacctgatcagcttgaa
agtgacccctcctccaaagagattatatcatcttcagattcattagaaaaagaacccatt
agatgtttaatattaagggcaaatggggagctatcattacttgacctaattgatggccgg
gaaagggagcttacagattccatagaattgttttgggttacctgtgggcggtcaggggac
aagacaaatttgattgaggaagtttcatggttagactatggtcatcgaggaatgcaggtt
tggtacccatcttcaggtttggacccttacaagcaggaagaattcttgcagttggatcct
gagcttgaatttgatcgtgaggtatatcctcttggtctgcttcccaatgctggaatagta
gttggcattacccagagactatccttttcagcatgcaccgagtttccatgttttgagcca
tctccgcaagttcaaacaatactacattgcctccttcgtcaccttcttcagagagataag
agtgaagaagccttacaactggctcgattgtcagaggagaagcctcatttttcccactgc
ttagagtggcttctttttactgtttttgaggccgagatttccagccaaaatgcaagcaaa
gatagtccttctcttttggagaaaacctgtgatttaataaagaaatttccggagtatttt
gacgttgtggttagtgtagcaagaaagactgatggtcgacattgggcagatttattttca
gctgctggaagatcaactgagttgttcgaagaatgcttccagaggagatggtatcaaact
gcggcttgctatatactagttatagcaaagctcgaaggagcacctgtcagtcaatacttt
gcgctacgcttgttacaagcaacgctgaatgagtcattatacgagcttgctggggagctg
gtgagatttctattgagatctggtagagagtatgaacctacaacaacagattcggataaa
ctatctcccaggtttctaggctatttccgttttccttctggtaagagactgtcctcagat
gcaagaagtccttcattcaaagagcagaatgcacatgttgcttctgtcaaaaatattcta
gaaagtcatgctagctacttgatgtctgggaaagaactctccaagcttgtttcatttgta
aaaggaacccagtttgatctagtggaatatctacaacgcgaaaaatatgggagtgctcgt
ttggagaattttgcttctggactcgagctaataagccagaagcttcaaatgggaaccttg
caaaaccgcttggatgcagaattccttttatctcatatgtgctctgtcaagtttaaagag
tggattgtagtattggcaactcttttaaggcgatctgaggttcttattgatttatttcgt
catgatatgcggctctggaaagcatatagtgcaacacttgagtcacatccatcattttcc
gagtaccatgatttactcggagccttgggggagaaactttcttccaatgaaatcacagaa
gaggcctga
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