Erigeron canadensis (horseweed): 122591287
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Entry
122591287 CDS
T07610
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122591287
03015 mRNA surveillance pathway
122591287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122591287
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122591287
mRNA cycle factors
P-body specific factors
122591287
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
122591287
NCBI-ProteinID:
XP_043619463
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All DBs
Position
3:26467943..26474421
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AA seq
511 aa
AA seq
DB search
MKGVWNRKKVVLRHLPHNISQEALMELIDARFSGRYNWFCFRPGKSSLKTQSYSRAYIDF
KQPEDVIEFAEFFNGHVFVNEKGTQCKTIVEYAPSQRVPKHWSKKDGREGTIDKDPQYLE
FLELISKPVENLPSAELQLERKEAERAGAAKEAPIVTPLMDFIRQKRAAKSVPRRSLVNG
KLARRATGASSSSSSSAAPKHGSDRRRTSTTMYVPRDTAKGRGGKEKSTYVQVHKHDDQP
LSEKPTGSSSASGSVVLEDGRGSSGTSDIGKKKILLLKGKEKEISNIQQSSSSVKLSHGS
GGPKQNQQREASSGRIIRSILVNKDARQHQSEQQNQTPNRDIVDRRPPRPSNALLLKDSN
GLPDDHDTHGFHNEKHDKRSTRNKDRPDRGVWTPLRRSDGSHASDESLSSHNSQSSQMQP
DFAEGTHGEVKYPSNARGGEFKPIGSGRGGHFSSDNGSQKHGGRRGQSHNTAKDADGYPT
LSEGKSSKRGVSTGHGSHEKQVWIQKSSSGP
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtgtgtggaatagaaaaaaagttgtgttgaggcacttgccacataatatatct
caggaggcgttaatggagcttattgatgcccggttttcgggccgttacaactggttttgt
tttcgtcctggcaagagcagtctgaagactcaatcttattctagagcctacatcgacttt
aagcaaccagaggatgtgattgagtttgctgagttctttaacggacatgtgtttgtcaat
gaaaagggcacccaatgcaaaaccatagttgagtacgcgccttcacagcgtgttccaaag
cattggtctaagaaagatggacgtgaagggactatagacaaagatcctcagtatctcgaa
tttcttgaattaatttcgaagcctgttgagaaccttccgagtgcagagttgcagctggaa
agaaaggaagctgaacgagctggtgccgctaaagaagcccctatagttacccctttaatg
gattttattcgccagaaaagagctgccaagagtgtacctcggaggtctttggttaatggg
aaattggcgagacgggctaccggtgcatcgtcttcaagctcaagttctgctgccccgaaa
catggttctgacaggaggagaacttctaccaccatgtatgtcccacgggatactgcgaaa
ggcagaggtggcaaagaaaagtcaacctacgttcaggtgcacaaacatgatgatcagccg
ctttctgaaaaacccacggggtcatcttctgcgtctggaagtgtggtgcttgaggatgga
aggggttcttctggaacctctgatattgggaaaaagaaaattctgctcttgaaaggaaag
gaaaaggaaatttccaatatacagcagagttcatcgtctgttaaactttcccatggttct
ggtggtcccaaacagaaccagcaacgagaggccagtagtgggaggattatcagaagcata
cttgtcaacaaggatgcacgacaacatcagtctgaacaacagaaccagactccaaaccgg
gatattgtggacagaagaccaccaagaccttccaatgcactactcttgaaggattctaac
ggattgccagatgatcatgatacacatggctttcacaatgagaagcatgacaagcgtagt
actaggaacaaggacagacccgaccgtggtgtttggactcctcttaggcgttctgatgga
tcacatgccagtgacgaatccctttcatctcataattctcaatcttcccaaatgcaacca
gattttgcagaaggaactcatggagaggtgaagtacccgtcaaatgccagaggtggggaa
tttaaaccgattggaagtggacgtggtggtcatttctcatctgataatgggtcccaaaaa
catggtggtcgacgaggacaatctcacaatacagctaaggatgcagatgggtatccaacc
ttaagtgagggaaaatcttcgaaaagaggagtttctactggccatggttctcatgagaaa
caggtctggattcagaagtcaagttccggtccttag
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