Erigeron canadensis (horseweed): 122591428
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Entry
122591428 CDS
T07610
Name
(RefSeq) endoribonuclease Dicer homolog 3-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122591428
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122591428
microRNA pathway
RISC loading complex
122591428
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
122591428
NCBI-ProteinID:
XP_043619633
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Position
3:complement(6037444..6044119)
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AA seq
956 aa
AA seq
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MVAASLDRQGSEKKKELHGITPIRAISGSWGDRINDCVDFYGYKVSFTCDIVDVKFSSLV
LLVESKLDEDVEDVQMNLYIGSNVVKCKVFSYVKLHLNAHQVAKAKGFHELCFNGIFGEL
YTGSKEPREFLLQSNRKLWNPNCMYLLLPLEFLEPLRISWKEIGSCVSVVDFVKKNSIFQ
AERDNVDSIMMNSDHGDMIHFANKSIHKDNVNEVVVLAIHTGKMYIVLKFIEDETADSPY
DRDQSRFSSFTDYFKKEYEIVLKYPRQHLLLLKQSDKTHNPLVDFSRQGIHMKKYHPHIP
PELLVIIDVRIDVVKSIYLLPSLMHRLESLMLASQLREEITGHAIDLHIPSSLILEAITT
YRCNESFSMERLELLGDAVIKYVISCDLYLKYVKDHEGNLSSRRSLQVCNSNLYNLGIGR
QLQGYVRDTAFDPTQWAAPGQLPFRRHPCDHGIETTEVPIDIKYQTEDPKIIIGRCCDRG
HRWLSSKTVSDCVEGLVAAYYVGKGLIGALHCMKWLGVCCDLDPSRINEAIEIAALHSYT
PKLDIIHSVESKLEYEFEAKGLLLEAITHASDRDQGTTYCYQRLEFLGDSVIDLLITSHL
YEKHRDITPGEMTDLRSASVNNENFASAAVRRKLHLHLQYRSSYLQSQIAEYVVASSSTD
TNSLQTKKCPKALGDLLESIAGAILVDTKFNLDKVWRIIEPLLSPIVTPDKLELPPSREL
RELCDSMGYYIDYSCSSKGDTTMVELRLQLQNAFLSAQGCGPTRKFARGLAAIRLLKELE
KREISQKNLGLDNRDGEINNQSSNISDTTPEEPNLVKNLKLNLVDRQPEDTPLVEKCLLE
KESNSKVEFQAAVLKSIDTKKGGPRSSLNELCMKMQWQAPIFTPLEQKSKNQTDIGEVLE
KRTAFNGFQSHITLTIPNYGAIELTGDPRADKKSSFDSAALLMLYELQRLGMLKIG
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggtagctgcatcgctggatcgtcaagggagtgaaaagaagaaggagttacatgggatt
acaccgattcgtgcaatatcgggtagttggggtgacagaattaacgactgtgtggacttc
tatggttataaagtcagtttcacatgtgatattgttgatgtgaagttttcaagtttggtt
cttttagttgaatcaaagctagatgaagatgtggaggatgtacaaatgaatttatacatt
ggttccaacgttgtgaaatgcaaggttttttcatatgtgaagttgcatctcaatgcacat
caggtagcaaaagctaagggatttcatgaattatgtttcaatggaatatttggggagttg
tataccggctctaaagagccaagagagtttttactacaatcaaacagaaaattgtggaat
ccgaattgcatgtacttgcttttgccattggagttcctagaaccattgaggatcagttgg
aaagagattggctcgtgtgtatctgtagttgatttcgtcaagaaaaattccatttttcag
gccgaaagagacaatgttgattcaatcatgatgaattctgatcatggcgatatgattcat
tttgccaataagtctatacataaagataatgttaatgaagttgtggtcttggctattcac
accgggaaaatgtatatagttctgaaatttattgaagatgaaactgcagatagtccatat
gacagagatcaatcaagattttcatcattcaccgactattttaagaaagagtatgaaatt
gtgctaaagtaccccagacaacacttgttgctgctgaaacaaagtgataagacacataac
cctcttgtggacttcagtcgtcaaggtattcacatgaagaaatatcatcctcatatacca
ccggaacttctagtcattatcgatgtgagaatagatgttgttaaatcaatttatctgtta
ccttcattaatgcaccgacttgagtcattaatgctggctagccagcttcgtgaggagatc
accggccatgctattgacttacacatcccatcatcactgattttggaagccatcacaact
tatagatgcaatgaaagtttttctatggagcgattggagttgcttggtgatgcagtgata
aaatatgtaatcagttgtgatctttatcttaaatatgtaaaggatcatgaaggaaatcta
tcttctcggagatcattgcaagtttgtaattcaaacttatataatttgggaatcggacgt
caattacagggttacgtaagagatactgcatttgatcctactcaatgggctgcacctggt
cagcttccatttagacgtcacccttgtgatcatggcatcgagactacagaagtacctatc
gatattaaataccagactgaagatccaaaaattataattggaaggtgttgtgatagaggc
cacagatggttgagttcaaagacggtatctgactgtgttgagggtctggtagcagcttat
tatgtaggcaaagggttgataggtgcccttcactgtatgaaatggctcggagtatgttgt
gatcttgatccatcacgcatcaatgaagccattgaaattgctgcactccattcatacact
ccaaagcttgatatcattcacagtgtagagtcgaaacttgagtatgagtttgaggcgaag
ggtctgttgttggaagctatcacacatgcatcggaccgagatcaaggaactacatactgc
tatcagaggttagagtttcttggtgattcggtaatagacttgcttattacttcgcatctc
tacgaaaagcatagagacatcactcccggagagatgacggatttacgttcagcctcagtg
aataacgaaaattttgcttccgctgctgtaagacgaaaacttcatctacacctccagtat
cggtcgagttatctccagagtcagattgcagagtatgttgtcgcttcatcgtccactgat
acaaactcgctgcagactaagaaatgccctaaggcacttggtgatctattagagagtatc
gctggggcaatattagttgataccaaattcaatctagataaagtttggcgcatcattgag
cccttattatctccaattgtaacaccagacaaacttgagcttcctccttcacgtgagctg
agggagttatgtgactcaatgggttattatatagactactcgtgtagtagcaagggcgat
actactatggtggagctacgattgcagctccaaaatgcctttttatctgcacagggctgc
ggtccaactagaaaatttgcaaggggtctagccgcaattcggttattaaaagagctagag
aaaagagaaatttcacagaaaaatctgggtctagacaatagggatggggaaatcaacaat
caaagcagcaatataagtgacacaaccccagaggaacccaatcttgtcaagaatttaaag
ttaaatcttgttgatcgtcagccagaagataccccccttgtcgagaaatgtttacttgag
aaagaatcaaattcaaaggttgaattccaagcggcagtcctaaagtcaatcgacacgaaa
aagggagggccaagatcttcactcaatgagctgtgcatgaaaatgcagtggcaagcacca
atatttacgccattagagcaaaagtcgaaaaatcaaactgacattggtgaagttcttgag
aaaagaacagcattcaatggctttcagtctcatattactttgactattcctaattatggt
gctattgagctcacgggagatccacgagcagataagaagagttctttcgactctgctgca
ctactcatgctatatgagctccagcgacttggaatgctcaaaattggctag
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