Erigeron canadensis (horseweed): 122591709
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Entry
122591709 CDS
T07610
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122591709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122591709
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122591709
Complex C
122591709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
zf-CCCH_12
zf-CCCH_3
zf-CCCH
zf-CCCH_PARP12
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
122591709
NCBI-ProteinID:
XP_043619892
LinkDB
All DBs
Position
3:complement(23170126..23173330)
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AA seq
426 aa
AA seq
DB search
MAEPKRLRAKPVSTIPVQYGSGCGSDNVMVGATTKENFGKECKICTRPFTVFRLKPGRDA
RYKKSEICRTCSKLKNVCQICLLDLEYGLPVQVCDTALSINSNDSIPKSDVNREYFAEEH
DRRARTGLDYESSYRKEQPNETILKLQRTTPYYKRNKAHICSFFVRGECTRGTECPYRHE
MPVTGELSQQIIKDRDYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGIDARVSEQ
DLKLMWGRPPVPKTDGETYSNEVRRHAVAHQQNQFQPPGAAGSQERQQPPQMHYFNIPPP
VPQHGRAFYPCMDPERMGAVIRAQEGSGASGSGSGPDQRHQGGPELAAYPPPSFPSQDGG
HYYPLYFQPGPPPSYGSPLSYQQYPPLSHPSTMPPPGPNAEQPYQQKAPADAAVIGPLLP
LTDPMY
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccaaagcggctaagagcgaagcccgttagcacgatacccgtacaatatgga
agtggttgtggcagcgacaatgtaatggtgggggcgactacaaaagaaaactttggtaag
gagtgcaagatctgcacgaggcccttcacagtcttcaggttgaaaccgggcagggatgca
aggtacaagaagagtgagatttgccgaacttgcagcaagttgaaaaatgtttgccaaatc
tgccttttagatcttgaatatggtttgccggttcaggtttgtgatactgcactcagcatc
aactcgaatgattccatcccaaagagtgatgtgaacagagaatacttcgcggaggaacat
gatcgtagggcaagaacaggtctagattacgaatcctcatatagaaaggaacaaccaaat
gaaactattttgaaactgcaaaggacaacaccatattacaagagaaataaagcacatatt
tgcagttttttcgttagaggtgaatgtacaagaggcactgaatgcccttaccggcatgag
atgcccgtcactggagagttatcccagcagattattaaagaccgtgactacggagttaac
gatccagttgcattgaaactactgaacaaggcaggtgaaatgccatctctggaaccccca
gaggatgagagcattagaaccctatatgttggtgggattgatgcaagagtctcagagcaa
gaccttaaactaatgtggggccgaccaccagtacctaaaactgatggtgaaacatattcg
aatgaagttagacggcatgcagttgcacaccagcaaaaccagtttcagccaccaggagct
gcaggtagtcaggaacgacaacagccaccacagatgcattattttaatatcccaccgcct
gtgcctcagcatggcagggcgttttatccttgcatggatcctgagagaatgggagcagtg
atccgtgcccaagaaggaagtggggctagtgggtcgggcagcggcccagatcagaggcat
caaggtggtcctgagttagctgcttatccaccaccatcgttcccatctcaagatggtggg
cattactatccgctttattttcaacctgggccaccaccatcatatggttcacctctatcg
tatcaacaatatcctccattgtctcatccttctaccatgccaccaccaggaccaaacgct
gaacaaccttatcaacagaaagcaccagctgatgcagctgtgatagggccactactacca
ttgacggatccaatgtattaa
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