Erigeron canadensis (horseweed): 122591908
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Entry
122591908 CDS
T07610
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122591908
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122591908
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122591908
NCBI-ProteinID:
XP_043620068
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Position
3:complement(31297532..31299127)
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AA seq
402 aa
AA seq
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MDNINFTSKAICYLFLMALFARNQAVVVDVKAKGAKGDGITDDGPAIMNAWKEACAAPPP
SSLVIPPGTYMAFPPIQLSGPCKGPIEIKATGATIKAPPEPEKFKTDTWIMITFIDRLTM
TGGTYDGQGQVAWKNSNCNSKQTTCQPPVNIRFGFCKNSLIKNLTSINSKYFHIAILGCD
NTTLDHLTITAPGNSRNTDGIHLARIKGLNITNSVIKTGDDCISFGDGASNIRVDKVTCG
PGHGISIGSLGKFPNEQPVQGVWVKDCTLIGTDNGVRIKSWPAAEPGIVNDVHFEDIIME
KVANPIIIDQNYCPGHACKKGGPSKVKISNVSYRKIKGSSSTKVAVKFDCSAGSPCNNVE
LADINLTQQGGAIATSQCANVKPKVVGQVIPPACPSGPRTAV
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggacaacataaatttcacctcaaaagcaatatgttacctctttcttatggcattgttt
gcaaggaaccaagctgttgttgtggatgtaaaagcaaaaggagccaagggcgatggcata
actgatgatggcccggcaataatgaacgcttggaaagaggcatgtgccgcaccaccgcct
agctcactagtgattccacccgggacttatatggcattcccccctattcaattgagtggt
ccttgcaagggtccgattgagatcaaggccaccggagcaaccataaaggcaccaccggag
cctgaaaagtttaaaaccgatacttggatcatgataacttttattgatagattgactatg
acaggaggtacttatgatggccaaggccaagtagcatggaaaaattcaaattgcaatagt
aaacaaacaacatgtcaaccaccagttaatatcagattcggcttttgcaaaaattcatta
atcaaaaacttaacgtctattaacagcaagtactttcacattgcaatattaggctgtgac
aacaccacacttgatcaccttaccatcactgctccaggaaatagtcgtaacacagatgga
attcatctagcacggataaaagggcttaacataacaaactcagttataaaaacgggtgat
gattgcatttcttttggtgatggagcaagcaatatccgtgtggataaggtgacttgtggg
ccagggcatggtatcagcatcggaagcctaggaaaattcccaaatgaacaacctgtacaa
ggagtctgggtcaaggattgtaccctcattggcactgataacggtgtcaggattaaaagt
tggcctgccgctgaacctggaatcgttaatgatgtgcatttcgaagatattatcatggaa
aaagttgctaatcccattattattgatcaaaactattgtcccgggcatgcgtgcaagaaa
ggtggtccatcaaaagtaaagatatcaaatgtaagctatagaaagatcaagggatcatca
tcaacaaaggttgcagtcaagtttgattgtagcgcaggatcgccatgtaacaatgtggag
ttggcagacattaacttaacacaacaaggaggagcaattgctacctcccagtgtgctaac
gtaaaaccaaaagtcgttggtcaagttatccctccggcttgtccaagtggcccacgtaca
gccgtatga
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