Erigeron canadensis (horseweed): 122591940
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Entry
122591940 CDS
T07610
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122591940
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
122591940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
PQQ
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
122591940
NCBI-ProteinID:
XP_043620097
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Position
3:complement(32516902..32518119)
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AA seq
405 aa
AA seq
DB search
MLETLLIASPDGRIIAYDPYTGTVLARFNGSRCPCNSIAIVGNNQFAVSHVSEQTGAGCV
NLYYWWSKSCAQSIPIPEPVVPLTAMVDGSYLFAGGVSGHIHSLSVPSGDLIHSFSAHEH
PVSCLAISSDGSLVLSGSDDGTIAVTPILLLLDSTFDIESRISGFNKFIGHESSVTGLST
GLGPCSGIMISSSLDWTCKVWNVVKGIHLQTVNFPGEMLCTVLDASETELYAAGADGIIY
KRKLKVETKNQLAEGRETIVWGRIHSGAVAAIEMANYGRTLLAVSENGRICAWETENGKM
TSSFCKKTGTVSSVVLVKGGGWFRKRGTEKGEFNGYGGTQEVGKMVKQVAEMGETLKVVA
EDRGREISNLESAIEVNEKLLNLMLKEAKAIAKFEDSKLTLKLKK
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaactttactaatagcctcccctgatggtcgaatcatagcctatgatccatac
actggaactgtcttagctcgcttcaatggtagccgatgtccttgtaatagcatcgctatt
gttggaaacaatcaatttgctgtttctcatgtttcggagcaaactggtgcaggctgtgtt
aatctgtattactggtggtcaaagtcttgtgcacaaagtattcctatccctgaacctgta
gttccgcttactgctatggtagacgggtcatatctgtttgcaggcggagtttcaggtcac
atacattcattatcggtaccttcaggagatcttatccattcattttcagcccatgagcat
cccgtgtcctgtctggcaatcagtagtgatggatcgttggttctctcagggagcgatgat
ggaacaatcgctgttactcctatattgttgcttctagattctacgtttgatattgaatcg
agaatttctggttttaacaaatttattgggcatgaatcatccgtgacaggattaagcact
ggcttgggaccgtgcagtggcattatgatctccagctcattggactggacttgcaaggta
tggaacgttgtgaaagggattcacctccaaacggtgaacttcccaggggaaatgttgtgc
acggtgctggatgcatcagagacagagttgtatgctgcaggagcagatggaattatatac
aaaagaaagcttaaagtggaaacaaaaaatcaactggcggaaggaagagagactatagta
tggggcaggatacacagcggggcagtagcggctatcgaaatggcaaattacggaagaact
cttttggctgtttctgagaacggaaggatatgtgcttgggaaacagaaaatggcaagatg
acaagtagtttttgtaagaaaactggaaccgttagcagtgttgtactggtgaaaggtgga
ggttggtttagaaaaagaggaactgaaaaaggtgaattcaatggttatggcggcacgcag
gaagtgggtaagatggtgaagcaggttgcggaaatgggagagactttgaaagtggtggca
gaagacaggggaagggagattagtaaccttgaatcagcgatcgaggttaatgaaaagctg
cttaacctcatgctaaaggaagccaaggcgattgccaaatttgaggactccaaactgacc
ttgaaacttaaaaaatga
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