Erigeron canadensis (horseweed): 122592344
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Entry
122592344 CDS
T07610
Name
(RefSeq) transcription initiation factor IIB-2-like
KO
K03124
transcription initiation factor TFIIB
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122592344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122592344
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
122592344
Prokaryotic type
Archaeal type
TFB
122592344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
WHD_GDS1
RB_B
HTH_Tnp_ISL3
DUF7573
TFIIB_C_1
Motif
Other DBs
NCBI-GeneID:
122592344
NCBI-ProteinID:
XP_043620481
LinkDB
All DBs
Position
3:35584566..35587564
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AA seq
311 aa
AA seq
DB search
MDTYCSDCKRSTEVVFDHSAGDTVCFECGLVLESHSIDETSEWRTFANESGDNDPVRVGG
PTNVLLNDGGLSTVISKPNGVTSDFLSSSLGRWQNRGSNPDRSLILAFKTIATMSDRLGL
VATIKDRANEIFKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGATKK
EIGRAKEYIVKQLELEMGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVKKSEEFD
IRRSPISIAAAVIYIVTQLSDDKKPLKDVSLATGVAEGTIRNSFKDLYPHLSKIIPAWYA
QEEDLKNLSSP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggacacatattgttcagactgtaaacgcagcacagaggttgtgttcgatcattcagcc
ggagacaccgtctgtttcgagtgcggcctcgttctcgaatcccactccatcgacgaaact
tccgagtggcgtactttcgctaacgaatccggagataacgatcctgtccgtgtcggtggc
cctactaatgttctccttaatgacggcggtttatccaccgttatttctaaacctaacggc
gttaccagcgattttttgtcttcttcccttggtcgctggcagaaccgtggatctaatcct
gaccgttccttgattttggcttttaaaactatcgctactatgtctgataggttgggtctt
gttgcgacaatcaaggatcgtgctaatgagatattcaagaaggtagaggatcaaaagtca
agtcgaggaagaaatcaggatgcgatattggcggcttgtctttacattgcctgtcgtcag
gaagacaagccacgcactgtaaaggaaatctgttctgttgccaatggagctactaaaaag
gaaattggccgggcaaaagaatacattgtgaagcaacttgagcttgaaatgggtcaatca
gtcgaaatggggactatacacgctggtgatttcatgaggcgcttttgttccaatcttggt
atgactaaccagactgtcaaagcggctcaggaatctgtcaagaagtcagaagagtttgat
ataaggagaagcccaatctcaattgctgcagctgttatttacatagtaactcaactttct
gatgataagaaacctctcaaagatgtatctctagcaacaggcgttgcagaagggactata
aggaactcattcaaggatctgtatcctcatttgtcaaaaataataccagcttggtatgct
caagaagaggatcttaagaacctctctagcccataa
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