Erigeron canadensis (horseweed): 122592372
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Entry
122592372 CDS
T07610
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122592372
03036 Chromosome and associated proteins [BR:
ecad03036
]
122592372
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122592372
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
122592372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
S1
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
122592372
NCBI-ProteinID:
XP_043620517
LinkDB
All DBs
Position
3:36321939..36329596
Genome browser
AA seq
1540 aa
AA seq
DB search
MAGKTVLTDDEEELEVEEEDRDEEPEGDAVDPEDRDEDDDEEEEEGDDEYEKDGFIVDDV
DEDDQDGEEDRADSDEERKRKKKRKKRESEKNYVLDEDDYELLEDNVGFRRPKAESKKFK
RLKKARDDADEGPSIFSDEDDYEGTEKGIERSLFDDDGGQRYNDIDGDDQPEDGEAREIG
GDDDNMSDFIVSEDDVDEHGEIIRRRTKVKKKSRHAPGVSSSAMQEAYDIFGDVDEFLKQ
RKEGLERSNRYDENGEWRERRLEDEFEPIILSEKYMTEDDGRIRDIDIPERMQISEQSTG
APPTDEMSIDDEGNWIFNQLGHELGVLKRDIISFLELRHLQKLDVPFIAMYRKEKCRSLF
MDVELQTDEANKNSSEKKPTIRWHRLLWDILELDRKWLLLQKRKSALELYYNKRFEEERS
IYDESRLHLNQILFDSITKSLKVAESEREIDDVDLKFNLHFPPGDTGVDEGQFKRPKRKS
QYSFCSKAGLWEAASKFGYSSEEFGLLISLEQMRTAELEDAKETPEEVASRFTCAMFADP
QAVLRGARHMAAVEISCEPCVRRHVRSIFMDNAVVSTSPTADGNLSIDSHHQFAGIKWLK
DKPLTRFDDAQWLLIQKAEEEKLIQVSLKLPASIHKKLFDDAHEYYLSDGVSKSAQLWNE
QRKQIIKDAFDGLLLPSMAKEARALLTSRAKSWLLKEYGRLLWDKVSVAPYQKKERDGHF
SYDYEDAPRVMACCWGPGNPATTFVMLDSHGEVLDVLYAGSINLRGQSANDQQRRDNDRE
RLTKFLTDHQPSVVALGAVNLSCPKLSEDIYGIFSDIVNDTPSVVRSEMDTLDVVYADET
LPHLYENSRISSDQLQPQPGIVKRAVALGRYLQNPLAMVATLCGPAKEILSWKLSPLESF
LTPDEKYGMVEQVMIDATNQVGLDVNLAISHEWLFAPLQFISGLGPRKAAFLQRSLVRAG
SIYVRKDLLTHGLGKKVFVNAVGFLRVRRSGNAASSSQFIDLLDDTRIHPESYSLAQELA
KDMYTHDAGDDVQEDEDMLEMAIEHVRENPISLKGLQIDAYARDKKRENIKDTLYHIQLE
LIQGFQDWRRPYVAPNKDEAFYMLSGETEETLSEGKIVQVTVRRVQPERAVCYLESGLTG
MLSKEDYSDDRRDIDLTERLNEGDILTCKIKAIDTNRPKVFLSCRGNDVRTNRSQNFRTM
DPYYHEDRDNSEIDKEKARKAKELAKKHFKSRMIVHPHFKNITADEAMEMLSDKEPGASI
VRPSSRGTSYLTLTLKIYEGVYAHKDIIEGGKENKDFTSVLCLGKTLKIGEDVFEDLDEV
MDRYVDPLVTHLKTMLAYRKFRDGGKAEVDESLRKEKIENPSRIVYSFGISHEHPGTFIL
TYIRSSNPHHEYVGLYPKGFKFRKKMFEEIDRLVSYFQRHIDDPHDVGPSIRSVAAMVPM
RSPAAGGSSGYGGGSNSNGGGYRGSSGDRERTSTPSFRSGRSDYRNGGSHDAHPSGLPRP
YRGRGRGRGSYNHRGSEGGNGRSRDVEDEWGSSAGWASGW
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaaaccgtcttaacagacgatgaagaggagctggaagttgaggaagaggat
agggacgaagaaccggaaggcgatgccgttgatcccgaagatcgtgatgaggacgatgat
gaagaagaggaagaaggagatgatgagtacgagaaagatggtttcatagtggatgatgtt
gatgaagatgatcaagatggagaggaggatagggcggatagtgatgaggagaggaaaagg
aagaaaaaacggaagaaaagagagtcagagaagaactatgttcttgatgaagatgattat
gagcttcttgaagataatgttggctttcgacgtccaaaagctgagagtaaaaagtttaaa
cggctaaagaaagcgagggacgatgctgacgaagggccatctatattttctgatgaagat
gattacgagggaactgaaaagggtattgagcgtagtttattcgatgacgatgggggtcaa
cgttataatgatattgatggagatgatcaacctgaagatggagaagctcgtgagattggt
ggagatgatgataacatgtctgacttcattgttagcgaagatgatgtagatgaacatgga
gaaataataaggaggaggacgaaggttaaaaaaaagtctaggcatgcccctggagtttcc
tctagtgcaatgcaggaggcttatgacatatttggtgatgtggatgagttcttgaagcaa
cgcaaagaagggctagaaaggagcaataggtatgatgaaaatggtgaatggagggaaagg
aggctagaagatgaatttgaaccaattattctttctgagaagtacatgactgaagacgat
ggtcgtatccgggatatagatattcctgaaagaatgcagatctctgaacaaagcactggt
gcgccaccaacggatgaaatgagtatagatgatgagggcaactggattttcaatcaactc
gggcatgagctgggagtacttaaaagagacattattagttttttggaacttaggcatctg
cagaaattagatgtgccgtttattgctatgtatcggaaggagaagtgcaggagtcttttt
atggatgtagagttacaaactgacgaggcgaataaaaatagctctgagaagaaacccaca
attagatggcacaggttactttgggacattttggagttagacaggaagtggttattgctt
cagaaacggaaaagtgctctagagctttactataacaagcgatttgaagaagaacgaagc
atatacgatgaaagccgccttcatttgaatcagatactgtttgattcaataacaaagtcc
ctcaaagttgctgagtcagaaagagaaatcgatgatgttgatttaaaatttaatctgcat
ttcccccctggtgatactggtgtggatgaaggacagttcaagagacccaagaggaaatcc
cagtatagcttttgcagcaaagctggactatgggaggctgctagcaagtttggctatagc
tctgaagagtttggattgctgatttctcttgaacaaatgaggacggctgaactggaagat
gcaaaggaaacaccagaagaggtggcatcaagatttacatgtgcaatgtttgcagatcct
caggctgtcctcagaggcgctaggcatatggcggcagttgaaattagctgtgagccgtgc
gttaggagacatgttcgtagcatcttcatggataatgcggtggtgtcgactagtcctact
gctgatggcaatttgtccatagattcacatcatcaatttgcagggatcaagtggttgaag
gacaagcctttgacaagatttgatgatgcacaatggcttcttattcaaaaggctgaagag
gagaagcttatccaagtgtccctaaagcttccagcatctatccacaagaaattatttgat
gatgctcatgaatactatcttagtgatggagttagcaaatcagctcaattgtggaatgaa
caaagaaaacagataataaaagacgcatttgatggtttgcttttaccatctatggcaaaa
gaggcaagggccttgctgaccagtagagccaaaagctggttactcaaggaatatggaaga
ctgttatgggacaaagtatctgtagcaccttatcagaagaaggaacgtgatggccatttc
tcctatgattatgaagatgctccaagagttatggcatgctgttggggtccagggaatccc
gcaacaacatttgtgatgttggattcacatggggaggtccttgatgtgctttatgctggt
tctattaacttgcgtggtcaaagtgctaatgatcagcaacggagagataacgatcgagaa
cggctcacgaagtttttgacggatcatcaacctagcgttgttgctctcggagctgtaaat
ttgtcctgtcctaagctctcggaggatatttatgggatctttagcgatatagtgaatgat
accccatcagtggtcagaagtgaaatggatactttggatgttgtctatgctgacgagaca
ctcccacacttgtatgaaaattctcgtatatcatctgatcaacttcaaccacaacctggc
attgttaagcgtgctgtggcccttgggcggtaccttcaaaatccattagcaatggttgct
accttatgtggaccagcaaaggagatcttatcgtggaaacttagccctttagaaagcttc
ctgactccagatgaaaagtatggcatggttgagcaagttatgatagatgccactaaccaa
gtcggccttgatgtaaatttagccataagccacgaatggttatttgctcctctacagttc
atttccggtcttgggcctcgaaaagcagcctttctacaaaggtccttggttagggctggt
tcgatatatgttcgtaaggacctgttgacccatggtcttggcaaaaaggtgtttgtaaat
gcagttgggttcttacgtgttcgtcgaagtggaaacgctgctagcagtagtcaattcatt
gacttattggatgataccagaattcatccggaatcatactcccttgcacaagagttggct
aaagatatgtacactcatgatgcaggagatgatgtacaagaggatgaggatatgcttgaa
atggcgatagagcatgtgagagaaaacccaatttcattgaagggactccagattgatgca
tatgcaagagataagaaacgcgagaatataaaagacactctttatcatatacaattggag
ttgatacaaggttttcaagactggcgaagaccgtatgttgcaccaaataaagacgaagcg
ttttatatgctttctggggagactgaagaaacactttctgagggcaaaatcgttcaagtg
actgttcgtagggttcaacctgagagagctgtatgttatcttgagtcagggttgactggt
atgcttagtaaagaagactacagtgatgaccgtagggacatcgatttgactgagaggttg
aatgaaggtgatattttaacttgtaaaataaaagcaattgatacaaatcggccaaaggtg
ttcttgagttgtagaggcaatgatgtaaggaccaaccgttctcaaaactttagaaccatg
gatccttattaccatgaagaccgtgacaattcagaaattgacaaagaaaaagctcgtaaa
gctaaagagttggcaaagaagcattttaagtcaagaatgattgttcacccacacttcaaa
aatattacagctgatgaagcaatggagatgctgtctgacaaggaacctggtgcgagtatt
gttcgtcctagttctcgtgggacctcatacttgactttgacactcaaaatctatgagggt
gtttacgcccacaaagatattattgaaggtggaaaggaaaacaaggactttacaagtgtt
ttgtgcctcggtaaaacgttaaaaataggagaagatgtatttgaagatctagacgaggta
atggatcgttatgttgatccattagtaactcacttaaagacaatgctggcttaccgcaag
tttagagatggagggaaagccgaagttgatgagagtttaaggaaagaaaaaattgaaaat
ccatcaagaattgtttactcttttggaatatctcatgaacatccaggcacatttatttta
acatacataagaagttcgaatccacatcatgagtatgttggattgtatccaaagggtttc
aaattccgcaagaagatgtttgaggaaattgacaggcttgtgtcttattttcaaagacac
attgatgatccacatgatgtggggccttctattaggtctgttgctgccatggtgccaatg
cgcagcccagcagctggtggttctagtggctatggtggtggttcaaatagcaacggtggt
ggctatagaggctcctctggagatcgtgaaaggacatccactccaagctttagaagtggt
agaagtgattacaggaatggtggtagtcacgatgcacatccaagtggtctgccgagacct
taccgtggacggggcagaggacgcgggtcatacaaccaccgaggaagtgagggtggaaat
ggaaggtctagagatgtggaagatgagtggggcagtagtgctgggtgggccagtgggtgg
tag
DBGET
integrated database retrieval system
