Erigeron canadensis (horseweed): 122592377
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Entry
122592377 CDS
T07610
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122592377
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122592377
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
122592377
NCBI-ProteinID:
XP_043620524
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Position
3:37731472..37736820
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AA seq
456 aa
AA seq
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MPVSITFFVFCSFIAFSMVFANAVTSTCLISSEQEKQAASQSLLGTSTIIAADSSKSRSS
SNDDDDIGIERNDNGSVDDPEMVASMVDMSIRNSTERRKLGFFSCGTGNPIDDCWRCDLS
WQRHRKRLAECAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDKPLWIVF
KRDMVITLKQELIMNSFKTIDARGVNVHIANGACITIQYVTNIIIHGLHIHDCKPTGNAM
VRSSPSHYGWRTMADGDGISLFGASHVWIDHNTLSSCADGLIDAIMGSTAITISNNLFTN
HNEVMLLGHSDSYTRDQVMQVTVAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG
GSANPTINSQGNRFVAPSNPEAKEVTKRVVTDGGWMSWNWRSDGDLMLNGAYFRPSGAGA
GASYAKASSLSAQPSSVVPTLTSGAGALVCRRGKQC
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgccagtctctatcacatttttcgtgttctgttcattcatagcttttagtatggttttt
gctaatgccgtgaccagtacgtgtttaatttccagtgaacaagagaaacaagcagcgtcg
caaagcttactaggcacctccacaattattgcggccgatagttcgaaatccaggtcatca
agcaatgacgacgacgacattggcatagaaaggaatgataacggtagtgttgatgatcca
gaaatggtggcttccatggttgatatgagcattcgaaatagcacagagagaagaaagcta
ggtttcttttcatgtggtactggaaacccaattgatgattgttggcggtgtgacctcagt
tggcaacgccatcgcaagagacttgctgaatgtgctattggttttggacgaaacgcaata
ggtggtcgtgatggtaggtactacgttgtaaccgacccgagtgatgatgatgcggttaac
ccaaaaccaggaaccctaagacacgcggtaatccaagacaaacctttgtggattgtcttc
aaaagagacatggttattaccttaaaacaagaactcatcatgaacagtttcaaaacaata
gatgctcgtggagtgaatgttcatatcgcgaatggggcttgcattaccatccaatatgtt
actaacattattatacatggtttgcatattcatgactgcaagcccactggcaatgccatg
gtccgtagctcaccatctcattacggatggagaaccatggcagatggtgatggtatatcg
ctctttggagctagccatgtttggatagatcataatactctatctagctgtgccgatggc
ctaattgatgccattatgggttcaactgctattaccatctctaataatctattcaccaac
cacaatgaggtgatgttactcggtcatagtgactcatacacacgagaccaagttatgcaa
gtaacggttgcatacaaccatttcggagagggacttgttcagagaatgccaaggtgtagg
catgggtatttccatgttgtaaataatgactacacacactgggaaatgtatgctattggt
gggagtgcaaaccccacaatcaacagccaaggaaaccgattcgttgctccttctaaccct
gaagccaaagaggtgacaaagagagtggtaacagatggggggtggatgagttggaattgg
agatcagatggagacctaatgttgaacggggcatatttcagaccatcgggtgcaggggct
ggagctagttacgcaaaggcttcaagcttaagtgctcaaccatcttctgtagtgcccact
cttacctcaggtgccggtgcacttgtttgccgccggggtaagcagtgttag
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