Erigeron canadensis (horseweed): 122592420
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Entry
122592420 CDS
T07610
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122592420
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122592420
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
DUF7317
Motif
Other DBs
NCBI-GeneID:
122592420
NCBI-ProteinID:
XP_043620573
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Position
3:35500055..35503001
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AA seq
448 aa
AA seq
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MMISWCTIGYHEDYSVPHYKSTGGFSRAYDWYMKAVKDFITFQDVDDDVIDNLANLSSTT
KTFDVDSYGAKGDGKKDDTKAFKKAWKEACASTTTSIFSVAKNKTYLVTPIKFEGPCKAS
SITMQISGTILASTKESKYKKDEKHWLRVDKVENLVIDGGGVIDGNGDVWWKNSCKVDKS
LPCKDAPTALTLYKCTTLTVKNLNIQNAQQMHISFDNCDDVQVSKIQITAPEDSPNTDGI
HVTHTQNIKISDSVIGTGDDCISIVSGSTNVQATGITCGPGHGISIGSLGSKNSEAHVSD
ITVDGATLTGTTNGVRIKTWQGGSGNATNITFKNISMKNVSNPVIIDQNYCDQDSPCKEQ
DSAVDIIDVTYQNITGTSADKEAITFDCSKNQPCQGIVLQDINLTRESGGKTKAVCNNVD
LTYKGTVTPKCPNNIVQERPTFGTSSYY
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgatgatctcatggtgcacaattggttaccatgaagattattctgttccccactataaa
tctacaggagggttttctagagcatatgattggtatatgaaagccgtaaaagatttcatc
acgtttcaagatgttgacgacgacgttattgataacttagctaatctatcttcaactact
aaaacatttgatgtggattcttatggtgctaaaggtgacggcaaaaaagatgatacaaag
gcattcaagaaggcatggaaagaagcgtgtgcatccacaacaacatcaatatttagtgta
gccaaaaacaagacataccttgtaacgccaattaagtttgaaggtccttgcaaagcttct
tccataactatgcagatatcaggaaccattttagcatcaacgaaagaatcgaaatataag
aaagatgaaaagcattggcttagagtggataaagttgaaaacctagtgattgacggaggt
ggagtcattgacggcaatggggacgtttggtggaagaattcttgcaaagtcgacaagtcg
cttccctgcaaggatgctccaacggccttaacgttatataagtgcacgacattaacagtg
aagaatttgaatattcaaaatgcacaacaaatgcacatttctttcgacaattgtgacgac
gtccaagtttcaaagattcaaattactgcgccggaagatagccccaacaccgatggaatt
catgtcactcacactcaaaacatcaaaatatctgactccgttataggaacaggagatgat
tgtatttcaattgtgagtggatccacaaatgttcaagctactgggatcacatgtggacct
ggtcatggtattagtattgggagccttgggtccaaaaattcagaagctcatgtttcggat
attacagttgacggggctacacttacggggacaacaaatggtgttagaatcaaaacttgg
cagggaggttcaggaaatgcgaccaatatcacatttaagaatatcagcatgaagaatgtg
tcgaaccctgtcattatagatcaaaattattgtgatcaagattcaccttgcaaagaacag
gattcagccgtcgatataatagacgtgacttaccaaaatattactggaacaagcgcagat
aaagaagcaataacatttgattgtagcaaaaatcagccatgtcaagggatcgtgttacaa
gacataaacctcactcgagaaagcggtgggaagactaaagccgtctgcaacaacgtcgat
ttgacttataaaggaactgtcacccctaaatgcccaaacaatattgttcaagaacgacca
acattcgggacttctagctactactga
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