Erigeron canadensis (horseweed): 122592514
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Entry
122592514 CDS
T07610
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122592514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122592514
03036 Chromosome and associated proteins [BR:
ecad03036
]
122592514
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122592514
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122592514
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
122592514
Noncanonical PRC1 (PRC1.1)
122592514
Noncanonical PRC1 (PRC1.3/1.5)
122592514
Noncanonical PRC1 (PRC1.6)
122592514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-RING_4
zf-C3HC4_4
Fez1
zf-rbx1
DDHD
zf-Nse
DUF7044
TRAF3_RING
zf-RING_6
zf-C3HC4_5
Motif
Other DBs
NCBI-GeneID:
122592514
NCBI-ProteinID:
XP_043620698
LinkDB
All DBs
Position
3:complement(46019104..46024577)
Genome browser
AA seq
445 aa
AA seq
DB search
MPAQKRPHDSEDDVNVSEQDSPNDDVQQQEESGDEDESSSSSSSSSSDEDEDEFVFVKLA
EVRKDVQCPICLGIIRKTRKVMECLHRFCRECIDKSMRLGNNECPACRAHCASRRSLRDD
PNYDKLIAILYPDIDKFEAEELAFHEEEKARNKQIQDSIAETSRRQLEALGKKRASAKAS
ANALRRSQRNTRNLRGKRNHRSSEPQDSDNEVDGDNDNEGRSSSSSSSDEPSSEVRPKRY
KRWAVGQSSLPPSSANGDCDDNEAEGSRKMFGVSAGLVGSPEILTWGRGGMRSAGKNAKR
QSTIAVKNTRNSHLSKLIGHLQKQNDDELDINLKLISLDEQNIPNLHNLFVCCKPSVSTS
NVCQYVALENNLQAKEVELLLVKGCHSDIDPSASSSVSPAEQSKPVVNPLTDELQLLNEH
QILLHIAKSSSQKDLTIAYRERSLS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgccagctcaaaaacgtcctcacgattccgaagatgacgtcaacgtttccgaacaagat
tccccaaacgacgacgtacaacaacaagaggagtctggtgatgaagatgagagctcctct
tcttctagttcaagttcaagcgacgaagacgaagacgagtttgttttcgtaaaattggct
gaagttcgcaaagacgtgcaatgcccaatctgtttaggtataattcggaagactagaaag
gttatggaatgcctacaccggttttgccgagaatgcattgacaaatccatgagacttggg
aacaacgaatgccctgcttgtcgtgctcattgcgcaagccgccgctccttgagggatgat
cccaattatgataaactcattgcgatattgtaccccgacatagataaatttgaggcagag
gaattggcttttcatgaagaagaaaaagctcgaaataaacagattcaagattccattgct
gaaacttctcgccgccagttagaagcactggggaaaaagcgggcaagtgctaaagcttca
gcaaatgcacttaggagatcacagagaaacacccgaaatctaaggggaaagagaaaccac
agatcttccgaacctcaagattctgacaatgaggttgatggtgataatgataatgaaggc
agatcttcatcttcatcttcatcagatgagccctcttcagaagtcagacccaaacgatat
aaaagatgggcagtaggtcagtcttcattgccaccaagtagtgcaaacggagattgtgat
gacaatgaagcagaaggttccagaaaaatgttcggtgtgtctgctgggcttgttggtagt
ccagaaattctgacctggggtcgtggtggcatgcgtagtgctggtaagaatgcaaagcgc
caaagcactattgctgttaagaatactaggaacagccacctctcgaagctgattggtcat
cttcaaaagcaaaacgatgatgagctggatatcaatctcaagctcatatccttagatgag
caaaacatacccaatttgcataatttatttgtttgctgcaagccaagcgtttcaacttca
aatgtctgtcagtatgttgctcttgagaacaatctgcaagccaaagaggttgagttgttg
ttagtgaaggggtgccattctgacattgatccttcagcgtcttcaagcgtttcacctgct
gaacagtctaaacctgttgtaaatcctcttacggatgagttacaattattgaacgagcat
caaatcttgttgcatattgctaaaagttccagtcagaaggatctgactatagcttacagg
gagaggtcgcttagctag
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