KEGG   Erigeron canadensis (horseweed): 122592702
Entry
122592702         CDS       T07610                                 
Name
(RefSeq) protein RAE1-like
  KO
K14298  mRNA export factor
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122592702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122592702
   03036 Chromosome and associated proteins [BR:ecad03036]
    122592702
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     122592702
Chromosome and associated proteins [BR:ecad03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    122592702
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML EIF3I Beta-prop_SPT8 Beta-prop_TEP1_C ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_BBS7 WD40_like
Other DBs
NCBI-GeneID: 122592702
NCBI-ProteinID: XP_043620928
LinkDB
Position
3:complement(27569135..27572722)
AA seq 350 aa
MSAFGITSNSSNSNPNKSTEVISPPTDAISSLSFSPKANHLIATSWDNQVRCWEITKSGS
SVGSVAKTYMSHDQPVLCSAWKDDGTTVFSGGCDKQVKMWQLLSGAQPVTVAMHDAPVKE
VAWIPEMNLLVSGSWDKTLRYWDLRQSNPVHTQQLPERCYALTVRYPLMVVGTADRNLIV
YNLQSPQTEFKRISSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEQQQSKNFTFKC
HREGNDIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCNQPIPCGSFNND
GSIYAYAVCYDWSKGAENHNPATAKNYIYLHLPQENEVKGKPRPANSGRK
NT seq 1053 nt   +upstreamnt  +downstreamnt
atgtctgcatttggtattacttctaattcttctaattcaaacccaaacaagtcaactgag
gttatatcaccaccaacagatgctatatcaagtctatctttcagtcctaaggctaatcac
cttattgctacctcttgggataaccaggtgagatgttgggagataacaaaaagtggaagt
tctgttggctctgtggcaaagacatatatgtcacatgatcagccggttctatgttcagct
tggaaggatgatggaacaacagtcttctctggaggctgtgacaaacaagtgaaaatgtgg
cagttactgtctggcgctcagccagtaactgtggctatgcatgatgctccagtgaaggag
gttgcttggattccagagatgaatttattggtatcgggaagctgggataagactctaaga
tactgggacttgaggcaatcgaatccagttcatacccaacaacttcctgaacgctgctat
gcacttacagtgagatatcccctgatggttgttggcactgcagatagaaatctcattgta
tacaacttgcagagccctcagaccgagtttaagaggattagctctccactgaagtaccaa
acaaggtgtgttgctgcgtttccagaccagcagggttttttggttgggtcaatcgaaggg
agagttggtgtgcatcatcttgatgagcaacaacaaagtaaaaacttcacttttaaatgc
cacagagagggcaatgatatatactcagtcaattctcttaacttccatccggttcatcac
acatttgcaactgcgggatctgatggtgctttcaacttctgggataaagatagcaaacaa
agattgaaggcaatgttaagatgcaatcaaccaataccttgtggcagcttcaataacgat
ggctctatatatgcttatgcggtatgctatgactggagcaagggtgcggaaaatcataat
ccagcaaccgcaaagaactatatctacttgcatttgcctcaggaaaatgaggttaaaggc
aagcctcgccctgcaaacagtggaagaaagtga

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