Erigeron canadensis (horseweed): 122592802
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Entry
122592802 CDS
T07610
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122592802
09122 Translation
03013 Nucleocytoplasmic transport
122592802
03015 mRNA surveillance pathway
122592802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122592802
03041 Spliceosome [BR:
ecad03041
]
122592802
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
122592802
Spliceosome [BR:
ecad03041
]
Common components
Common spliceosomal components
Cap binding complex
122592802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
DUF5798
TPR_MLP1_2
ParcG
Exonuc_VII_L
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
122592802
NCBI-ProteinID:
XP_043621051
LinkDB
All DBs
Position
3:2235999..2243689
Genome browser
AA seq
884 aa
AA seq
DB search
MSSWRSFILRIGEKSSEYGGTIDFKDHIDACFGAVRRELEQSQDEIITFLLECAEQLPHK
VPLYGTLIGLLNLDNEDFVKKILERTQKNLQDALDSEDCNKIRVSLRFLTALMCSKVIQP
SSLVVVFETLLSSAATIVDDEKGNPAWQARADFYITCILSCLPWGGSELGEQIPEEIERV
MVGIEAYLSIRRHVSDVGLSVFEDMNKSDKLHVEKDFVEDLWGRIQDLSKNSWKLESVPR
PHLLYEAQLVAGKSHDFGPISCPEHPDAPEELSEISFGRQKHEAELKYPQRIRRLNIFSA
SKTEVAKLDIRRLNIYAQSSVLFSIAMLILFITFWRQDLQPIDRFVVEEYLLDVLFYLNG
CRKECAACMVGLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIIDLCKSLPGAFPA
VVAGAVRALFDRISELDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLELPKWAPQRVFV
QEVLDREVRLSYWDKVKQSIESTPALEELLPPKGGPDFRYGSEDDDKTEYALSVELNGMV
KGRKTARDVIIWLQDSVIPVNGLDVALRVVVHTLLDIGSKSFTHLITVLERYGQVIAKIC
PSEETHIMLIEEVSSFWKNSAQTTAITIDRMMGYRLISNLAIVKWVFSSSNIKLFHTSDR
LWEILRNALNKTYNRISDLRKEINNLKKSVKQAEESVARAKSELDAAETKLMLVDGEPVV
GENPAKMKRLNLNVEKTRDEEVSVRESLESKEALLARALEENKALFLSLYKNFSSVLMER
LHETFGERGLESTADLEAMAVDEEDTPAMDMDKENGSSKSGYAIGEKEQWCLSTLAYLKA
FSRQYASEIWPHMDLLEVEVLTESVHPLFRKAVYSGLRLQLTDQ
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgagtagctggcggtctttcattctaagaatcggcgagaaatcatctgaatatggcgga
actattgatttcaaagatcacattgatgcttgctttggcgctgttcggcgtgaattagaa
cagtctcaagatgaaatcataacttttcttctagagtgtgcagagcaattgcctcacaag
gttccgctgtatgggactttgattgggttattgaacttggacaatgaggattttgtcaag
aaaatattggagaggactcaaaagaatttgcaggatgcgcttgactctgaagattgcaac
aagattcgtgtatcgttgcgattcctaactgctttgatgtgtagcaaagtcatccaacca
agttcactagtggtggtttttgaaacattattatcgtctgctgcaactattgtggacgat
gagaaggggaaccctgcctggcaagcccgtgccgatttctacataacttgtattctttcc
tgccttccgtggggtggatctgaacttggcgagcaaattcctgaagagattgaaagagtt
atggtggggatagaagcttatttaagtatcagacgacatgtttctgatgtgggtctatct
gtgtttgaggatatgaacaaaagtgacaaacttcacgttgaaaaggattttgtggaagac
ttgtggggtcgaattcaagatctatccaagaacagctggaaacttgagagtgttccgagg
ccacatctattgtatgaagcacaattagttgctgggaagtctcatgattttggacccata
agctgccccgagcatccagatgcacctgaagaactttctgaaatcagttttggtagacaa
aaacatgaagcagagttgaaatatcctcagaggattcgtaggcttaatatattttctgct
agcaaaactgaggtagctaaacttgatatacgtaggcttaatatatatgcacaatcatct
gttctcttttctattgctatgttgattctcttcataaccttttggcggcaggatctacaa
cctatagaccgatttgttgttgaagagtatttattggatgtgctcttctatttaaatgga
tgtcgaaaggaatgtgccgcatgcatggttggtctccccgttcctttcagatacgagtat
ctcatggccgagacaattttttctcagttgcttttattgccccagccaccattcaagccc
atatattacacgctcgtcataatagacctttgcaagtcccttccaggtgccttccctgca
gttgtagcaggggctgtccgtgctctttttgatagaattagtgagttagatatggaatgt
aggactcgccttattctttggttctcacaccatttatcaaactttcagtttatctggcca
tgggaagaatgggcttatgtcttggagcttccaaaatgggccccacaacgggtatttgtc
caggaggtcttggatagagaagtccgtctatcttactgggataaagtgaagcagagcatt
gaaagcactccagctttagaggagttgcttcctccaaaaggagggccagacttcagatac
ggttcggaagatgatgataaaactgaatacgcgctttcagtagaacttaatggtatggtg
aaaggaagaaaaacagcacgtgatgttattatctggttgcaagatagtgtaataccagtc
aatggactagatgttgctcttagagttgttgttcatacccttttggacattggatcaaag
agttttactcatctgattaccgtgttagaaagatatggacaagttattgctaaaatttgt
ccaagtgaagaaacacatattatgttaattgaggaagtcagttcattttggaagaatagt
gctcagactactgccataacaattgatagaatgatgggttatcggctaatttccaattta
gctattgtcaaatgggtcttctcttcatcaaacatcaaattgtttcacacaagtgatcgt
ttgtgggagattctcagaaatgcacttaacaagacatacaaccgtatttcagatctgagg
aaagagataaataacttaaaaaagagtgttaaacaagccgaggaaagtgtggccagggcc
aaatctgagttggatgctgccgaaacaaagcttatgcttgttgacggtgagcctgttgtt
ggggagaatcctgctaagatgaaacgcttgaatttaaatgttgaaaagacaagagatgag
gaagtgtctgtccgtgagtctttagagtcaaaggaagctcttcttgcacgcgcccttgaa
gaaaataaggccttgttcctctcactatacaaaaatttctccagtgttttgatggaacgc
ctccatgagacattcggagagagaggcttggagtcgactgctgatttagaagcaatggca
gtggatgaagaagatacacctgcaatggatatggataaagaaaatggtagttccaaaagt
ggatatgccatcggagagaaagaacaatggtgtttgtcaactttggcatatctcaaggct
ttttcaagacagtatgcttctgagatatggccacacatggatttgttagaagtggaagtg
ttaacagaaagtgttcatcctctattcagaaaagctgtttattctggtttgcgtctgcag
ctcaccgatcaatga
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