Erigeron canadensis (horseweed): 122592886
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Entry
122592886 CDS
T07610
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122592886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122592886
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122592886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
122592886
NCBI-ProteinID:
XP_043621144
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Position
3:complement(39811654..39820228)
Genome browser
AA seq
1279 aa
AA seq
DB search
MAFRRPSNGRSPLVNPQRQITSFFTKSPSPSQSQSPSPVQSNPKLNPKSNPNPNSPSPST
LQPKITKKLPLVIGQAPKNPSYGEEVVNRRIRVYWPLDKIWYEGYIKSFDKSVSKHLVQY
DDSEEELLDLSKEKVEILKQEKAKRFRRLRRFSIEDNVGKSKDDDDDDDWEMKADKDVVD
DDSDDKDWEMKVDKDVVDDDEMVDLGLVDEEEEEEEEDVKKADFKKRKGSGVKLNSDSGK
KIKTESPISRCTFLEATKNKDNSAGVKVSNIVGNTAVVGDKADRFALREEEKFKFLGKNR
RDSKRRSPGDDGYDPRTLYLPSDFLNKLTGGQRQWWEFKANHMDKVLFFKMGKFYELFEM
DAHVGAKELDLQYMKGDQPHCGFPEKNFESNVEKLARKGYRVLVIEQTETPEQLDKRRKQ
QGSKDKVVKREICAVITKGTLTDGEMMSAHPDASYLFAISECCQASENKQNDRIYGVCVA
DVATSKIMIGEFKDDFECSALSCLLSQLRPVEIIKPIKLLSPETEKVLLRQTRKPLVNEL
VPLTEFWDSKKTIHEIKEIYQRISNQSVSSSSNESTSSATNDCLPEVLSELMTAGEIGNY
ALSALGGTLFYLKKAFLDESLLRFAKFELLQCSGTSDFTTKLYMILDATALENLEVFENS
VNGDSKGTLYDQLNRCVTAFGKRLLKAWLARPLYDINLIRERQEAVAGVKGVNLPLALEF
RKELSRLPDMERLLARIFSCSSEANGRNSGKVVLYEDAGKKQLQEFITVLSGCDLVINAC
SSLHAILENTDSRLLHRLLTPGEHLPDVSAVFRQFKDAFDWTEAKNSGRIIPREGADKVY
DMACKTVADIELSLKKHLKEQRELLEDPSINYVTVGKESYLLEVPESLCGSLPRDYELQS
SKKGFSRYWTPVIKDCLRELSEAESEKESKLKSIMQRLIGRFCEHHVSWRQLVTTVAELD
VLVSIAIASDLYEGPTCRPLIVDPSIKNESPFLSAKNLGHPVLRNDTLGDGTFVPNDVCI
GGSGHPKVILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFKMSPIDRIFVRMGAKD
HIMAGQSTFLTELLETASMLSSATHNSLVALDELGRGTATSDGQAIAASVLEHLVNKVHC
RGLFSTHYHHLALDYQQTPKVSLCHMACQVGKGIGGLEEVTFLYKLTLGACPKSYGVNVA
RLAGLPDAVLQKAAIKSEEFEMMYGKKMNQSKPTSQGWNNDMAVILQSLRNCLVDTYSGS
SADPICELQNRAKILLEQK
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggcattccggcgaccatccaacggccggtcaccgttagtgaatccacaacgtcaaatc
acatctttcttcaccaaatcaccctcaccatctcaatcccaatctccatcccctgttcaa
tcaaaccctaaattaaaccctaaatcaaaccctaaccctaattccccttccccatccaca
cttcaacccaaaatcactaaaaagctccccttagttatcggccaagctccgaaaaacccg
agctacggcgaagaagtagtgaatcgaaggattagggtttactggccacttgataaaatc
tggtacgaaggttatattaagtcatttgataagagtgtatctaagcatttggttcagtat
gatgattctgaagaggagcttttggatctatccaaggagaaagttgagattttaaagcag
gaaaaggcgaaacggtttcgccgattaagacggttttcgattgaggacaatgtgggtaaa
agtaaagatgatgatgatgatgatgattgggaaatgaaggctgataaggatgttgttgat
gatgacagtgatgataaagattgggaaatgaaggttgataaagatgttgttgatgatgat
gaaatggtggatttgggtttggttgacgaggaggaggaagaagaagaagaagatgttaaa
aaagcggacttcaagaaacgaaaggggtcgggtgtaaaattgaattcggattcgggtaag
aagattaagaccgagtctccaataagccggtgcacatttttggaggctactaagaataag
gataattctgcaggtgtgaaggtatctaatattgtaggtaacactgctgtagttggtgat
aaagccgacagatttgccttgcgagaagaagagaaatttaagtttcttggaaagaaccgc
agagactccaagaggagatcccccggagatgatggttacgatccaagaactctgtacctg
ccttctgatttccttaataaactaactggtggccagaggcaatggtgggagttcaaggca
aatcatatggataaggttttatttttcaagatgggaaagttttacgagctctttgaaatg
gatgcacatgttggagcaaaagaacttgatttgcagtatatgaagggtgaccagccacat
tgtggatttccagagaagaacttcgaatcaaatgtagagaagttagcccgcaagggttac
cgtgttctagttatagagcagacagagacacctgaacagcttgacaagcgtcgcaaacag
cagggctctaaagataaggttgtgaaacgtgaaatatgtgcggtaatcaccaaaggaaca
ttaactgatggagaaatgatgtcagcacatcctgatgcttcttacctgtttgcgatatct
gaatgctgtcaagcatcagaaaacaaacaaaatgatagaatatatggtgtttgtgtagct
gatgttgctacaagcaagatcatgattggagagttcaaagatgattttgagtgcagtgca
ttgagctgtttattgtctcaactaagaccggtggaaataattaaacctatcaagttgctc
agcccagaaaccgaaaaagtacttttaaggcaaacaagaaagccccttgtaaatgaattg
gtgcccctcacagaattctgggattctaagaaaactatccatgaaatcaaggagatctac
cagcgtatcagtaatcaatcagtttcatcgtcttcaaatgaatccacatcatctgccact
aatgattgcttaccagaagttctctctgagctaatgactgcaggagagatcggtaactat
gctctctcagcccttgggggcactctattctatctgaaaaaggccttcctggatgagtca
ttgcttcggtttgcaaaatttgagcttcttcaatgttctggaaccagtgatttcaccaca
aagctgtatatgattcttgatgctacggctctagagaaccttgaagtgtttgagaacagt
gtaaatggagactctaaagggacattatatgaccaactaaaccgttgcgtgacagccttt
gggaaacggttgcttaaagcatggcttgctagacctttatatgacataaacttaatcagg
gaacgtcaggaagctgtagctggtgtgaagggagttaatctacctcttgcacttgaattt
cgtaaagagttgtctagacttccagacatggagcggttgcttgcacgcattttttcttgc
agcagtgaagctaatggtagaaattcgggtaaagtggttctctatgaggatgcaggcaag
aaacaacttcaagagttcataacggttctcagtggttgtgatttagttataaatgcatgc
tcttcactacatgccattctggaaaatactgattctaggctgctgcatcgcttacttaca
cctggtgaacatcttccagatgtttctgcagtttttaggcagttcaaggatgcttttgat
tggacagaggcaaaaaattcagggcgtataatccctcgggaaggggctgataaagtatac
gacatggcttgcaaaaccgttgcagatattgaattgagtctgaaaaagcacttgaaggaa
caaagagaactacttgaagatccatcaatcaattatgttactgtagggaaggaatcttat
cttcttgaagtacctgaaagtttgtgtgggagtcttcctcgtgattatgagctacagtca
tctaaaaagggtttctcccgttactggactcctgttattaaggattgtcttcgggagctc
tcggaagctgaatctgagaaagagtcaaagttgaaaagcatcatgcagaggttgatcggg
cgcttctgtgagcatcatgttagctggagacagttggttactacagttgcagaacttgat
gtcctagtcagtatagccattgcaagcgacctgtatgaaggaccaacatgtcgtccactt
attgtggatccatcaatcaagaatgaatcaccatttctttctgccaagaatttagggcat
cctgtgcttcgaaatgatacattaggggatggcacctttgtcccaaatgatgtttgtatt
ggtggttctggtcatcccaaagttattctacttactggtcctaacatgggtgggaagtct
actcttctgcgtcaagtttgtttagcagttattttggcccaggtgggagcagatgtgcct
gctgaaagctttaagatgtcccctattgatcgtatatttgtgcggatgggtgcaaaagac
catataatggcaggccagagtacatttttaaccgagcttctggaaactgcatctatgctg
tcatcagcaacccataattcacttgtggcattggatgaacttggacgaggaacagcaaca
tcagatggtcaagctatagctgcatcagttcttgaacaccttgtcaacaaggtccattgt
cgggggctattttctactcattatcaccacttggctttggattatcagcaaactccaaag
gtttccctgtgtcacatggcatgccaagttggaaaaggaattggaggtctagaggaggta
acattcctctacaagttgacacttggtgcatgccccaaaagctatggtgtcaatgttgca
agactagcaggacttcctgatgctgtgcttcaaaaggctgcaatcaagtcagaagagttt
gagatgatgtatggtaagaaaatgaaccaatccaagcccaccagtcagggttggaacaat
gacatggcggtcatcttgcagagcttaagaaactgtcttgtagatacatattctggttct
tcagctgatcccatatgtgaactacaaaatagggcaaagattcttttggagcaaaagtag
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