Erigeron canadensis (horseweed): 122593233
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Entry
122593233 CDS
T07610
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122593233
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
122593233
Transfer RNA biogenesis [BR:
ecad03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
122593233
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-GeneID:
122593233
NCBI-ProteinID:
XP_043621550
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Position
3:complement(36432927..36442787)
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AA seq
795 aa
AA seq
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MVVRTGVTLLRSTSPSSPLPLTAFRRFQQIRPYPYLQFSRFSICRPLVFSHFHHNVIRYG
NRSYSVQSFVDSVLEEFEGLRRRKIRAGNKSLLTNSKAVVDNNLQKQVLQKGLLLEFKKD
SERILLAVAQKPDGRRNWIVSDQNGVTTSIKPQQITYIVPGLINLNTTQISDFNQKAQDN
LDPTLLEFAWIELLDSNKSVTAAELAEMIFGSAEPLESYCAHLLLSRDEVYFTVLDSKGS
CAVYGPRTTVQVEEMKRKLLAKEAAEKEFQEFLQLLKSAKSMPPRDKPCKGSWQADEKNW
HKIESLEAFAIDACKDDGQKNTAGAILKAMGLAKTSTSAVNLLIDIGYFPVHVNLDLLKL
NVRTSYPDHILSAADRLLQESLDADKDNRIDLTHLKVYAIDVDEADELDDALSATKLQDG
RIKVWIHVADPASFVEPGSLIDREALRRGTSVFLPTATYPMFPEKLAMEGMSLQQGTNCR
AVTVSVVLRSDGSIAEYAVNNSIIRPTYMLTYESASELLHMNLEEEVELRILAEAASLRL
QWRRGQGAIETGSLEPRIKVENPDDPEPSIRLYVDDQTDPAMRLVSEMMILCGEALATFG
SSNKIPLPYRGQPQSKIDTSAYDHLPEGPVRSSAIVKLMRAAEMDYRKAIRHGILGIPGY
VQFTSPIRRYMDLLAHYQVKAFLRGDALPFTSGQLEGMAASVNMNTRIAKKLFSSSLRYW
ILEYLRRQPKQRKFRALILKFLKDRNASLLLLEVGFQASAWVGIGSHVGDEVEVRVEEAH
PRDDTISFKEVIRVT
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggtggtccgtacaggagtcaccctacttcgctccacgtcaccgtcatctccgttgccg
ttaactgctttccggcggttccaacaaatccggccttatccgtacttacagttttctcgt
ttttcaatttgtagaccgttagtttttagtcattttcaccataacgtaatacgatatgga
aatcgaagctattctgtacaaagcttcgtcgattctgtgctcgaagagttcgaagggtta
cgcagaaggaagattcgtgccggtaataaatcattattgacaaacagtaaggcggttgtt
gataacaatctacagaagcaagtattgcagaaaggattgcttttggagtttaagaaagat
tctgaaaggattttgctcgctgttgctcagaaacctgatggaaggaggaattggatagtt
tctgatcagaatggtgttacaacttccattaaaccacagcaaatcacttatatagttcca
gggcttattaatttaaataccacgcagatatcagatttcaatcagaaagctcaggataac
ttggatcccacactccttgaatttgcttggattgagcttcttgatagtaacaaatcagta
acagctgcagaattggctgagatgatctttggcagtgctgaacctcttgagagctactgt
gcgcatctcttactatcaagagatgaagtttacttcactgtgcttgacagcaaaggctct
tgtgctgtctatggtcctcggacaactgttcaggtagaagaaatgaagcgtaaactgctt
gctaaggaggcggccgagaaagagtttcaagagttcttacagttgctgaaatctgcaaaa
tcaatgccaccacgtgataaaccttgtaaagggtcttggcaagctgacgagaaaaactgg
cacaaaattgagtctcttgaggcatttgctatagatgcttgtaaagatgatgggcaaaag
aatactgcaggagcgatcctaaaggcgatgggcttagctaagacgtctacttcagcagta
aatctcctcatagatatcggatatttccctgtacatgtcaatcttgatcttctgaagctc
aacgtacgtaccagttatccagatcatatcttgtcagcagctgacagactgctgcaagaa
tcactggatgcagacaaggacaataggatagatctgacacatctgaaggtatatgcaatt
gacgtggatgaagcagatgagcttgatgatgcattgagtgcaacaaagttgcaggatggt
cgtattaaagtttggatacatgtcgctgatccagctagctttgttgagccagggagcttg
attgacagagaagcattacgaagaggaacatctgttttcttaccaactgccacctatcca
atgtttcctgaaaaacttgccatggagggaatgagcttgcagcaaggaacaaattgcagg
gcagttacagtgtcagttgtactgcgttctgatggaagtattgcagaatatgcagtgaat
aattcaattattaggccaacctatatgttaacatatgagagtgcatccgagcttcttcat
atgaatttagaagaagaggtggaattgagaattcttgcagaggcagcaagtcttcggctt
cagtggcggcgtggacagggtgcgattgagacagggtcattggaacctagaataaaggtg
gaaaatccagatgatccagaaccatcaattaggttgtatgttgatgaccagacggatcct
gctatgcgacttgtttctgagatgatgatactttgcggggaagctctagccacatttggt
tcttctaataagattccattaccatacagaggacagccccagtcgaaaattgatacgtct
gcatatgatcatcttccagaaggcccagttcgcagctccgcaattgtcaaacttatgcgt
gctgctgaaatggattatagaaaagctatacggcatggtattctcggaattcctggttat
gtacagtttacatctcccattcgcagatatatggacctccttgctcattaccaggtgaaa
gcttttcttagaggtgatgctcttccatttacatctgggcaactggaagggatggctgca
tctgtgaacatgaacactagaatagcaaagaaactatttagtagcagtctacgatattgg
atactagagtacttgagaaggcaacccaaacaaagaaaatttcgtgcattgatccttaaa
ttccttaaagatcgcaatgcgtctttactacttctggaggttggatttcaagcatctgcg
tgggtggggatagggtcacatgttggtgatgaagtggaggttcgggttgaagaagctcac
ccgcgtgatgacaccatatcattcaaagaagtaatacgagtgacatga
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