Erigeron canadensis (horseweed): 122593371
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Entry
122593371 CDS
T07610
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122593371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122593371
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122593371
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_4
F-box_5
LRR_At5g56370
LRR_6
LRR_8
F-box
F-box-like
HcyBio
Motif
Other DBs
NCBI-GeneID:
122593371
NCBI-ProteinID:
XP_043621701
LinkDB
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Position
3:46641659..46644982
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AA seq
569 aa
AA seq
DB search
MDPVSSKKLPESFLKKTFSLINNNSDRNSLSLVCKDWYNIERVTRRHVSISNCYSVSPEI
LAARFPEIRSVTLKGKPRFSDFNLVPDNWGGDVQPWLNVFATAYPFLEELRLKRMEVSDE
SLEFLGMNFDGFKVLSLLSCDGFTTLGLEAIATHCKNLTELDIQENGIDDLGGDWLSFFP
ESLTSLEVLNFATLNSEVSFDALETLVSRCKSLRVLKVNRNISLDQLQKLLVLAPQLTEL
GTGTFTEDLVSSPVKELESAFSICKNLHTVSGFWDATLLYLPAVYPVCDRLTFLNLSYAS
LGAVELEQIISHCKQLTRLWVLDTVGDKGLEAVGSCCPLLEELRVFPADPFDQKVGVTES
GLVAVSNGCPKLHYILYFCQRMTNAAVITVAQNCLDFTHFRLCIMNPREPDYLSNEPMDE
AFGAIVKICTKLRRLSVSGLLTDLAFEYIGKYAKNLETLSIAFAGSSDLGMEYVMRGCPK
LKRVEIRDCPFGDSALLSGLGQYKSMRSLWMSACNVTMNGCKKLAEEMPMLNVEVIKDED
GDDSLANKVYVYRTVAGPRKDTPPFVLTL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggatccagtttcctccaaaaaactaccagaaagttttctaaaaaaaacattttcattg
atcaacaacaacagcgaccgaaactcattgtcactagtatgcaaagactggtacaacata
gaacgtgtaacgaggcgccacgtctccatatcaaactgttactctgtatcacccgaaatc
ttggcagctagatttcctgagatcagaagtgtgacactcaaaggcaaaccaaggttctca
gattttaaccttgtacctgacaactggggtggcgatgtccaaccgtggttgaatgttttt
gcgacggcgtatccgtttttggaagaattaaggttgaaaaggatggaggtaagtgatgaa
agtttggagtttctggggatgaattttgatgggtttaaggttttgtcgttgttgagttgt
gatgggtttactactcttggtcttgaagctattgctactcattgcaagaacttgacagaa
ctagacatacaagagaatgggattgatgatcttgggggagattggttaagtttctttcca
gagagcttaacctcattagaagtacttaacttcgcaactttgaatagcgaagtcagtttt
gatgctctggagactcttgtttctagatgcaagtccttgcgagttttgaaagttaatcga
aacataagtttggatcaattgcaaaagctgcttgtgcttgctccacagttgacagagctt
ggtactggtacattcacagaagatcttgtgtctagtcctgtgaaggaactcgaaagtgct
ttcagtatttgtaagaatctacatacagtttcgggtttttgggatgctactttgctttat
ctacccgctgtatatccggtgtgtgatcgattgacttttttgaacctgagttacgctagt
cttggggcagttgaacttgaacaaattatctctcattgcaagcagctaactcggctttgg
gttcttgatacggtaggagacaagggtttagaagcggtcggatcttgctgtcccttgcta
gaagaacttcgagtcttcccagctgacccgtttgaccaaaaagtgggtgtgaccgaatca
ggcctcgttgccgtatctaatggctgcccaaagctacattacatactctacttctgtcaa
cgtatgacaaacgctgctgtgatcaccgtagcccaaaactgcctagatttcactcacttc
cgcctttgcataatgaatcctcgggaaccagattacctaagtaacgagcccatggatgag
gcctttggggccattgtcaagatttgtactaagctccggcggctttcggtttcaggtctg
ttaaccgacctggcttttgagtatatcgggaagtacgcgaaaaaccttgagacactttcc
attgctttcgctggaagtagtgatttgggaatggagtatgtgatgagaggctgccctaag
ctgaaaagggttgagatacgcgactgtccgtttggggactctgctttgctttcgggtttg
ggccaatacaagtccatgaggtctttgtggatgtcggcgtgtaatgtgaccatgaatggc
tgcaagaagttggctgaagagatgcctatgttaaatgttgaggtgatcaaagatgaagat
ggcgatgatagccttgccaataaagtgtatgtgtatcgaactgttgccggaccacgaaag
gacacaccgcctttcgttctgaccctctga
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