Erigeron canadensis (horseweed): 122593514
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Entry
122593514 CDS
T07610
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122593514
03083 Polycomb repressive complex
122593514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122593514
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122593514
Histone modification proteins
HAT complexes
HATB complex
122593514
HDAC complexes
Sin3A-HDAC complex
122593514
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122593514
PRC2.2
122593514
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122593514
Heterochromatin formation proteins
Other heterochromatin formation proteins
122593514
Chromatin remodeling factors
NuRD complex
122593514
NuRF complex
122593514
NuRF complex (fruit fly)
122593514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
Beta-prop_EIPR1
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_SPT8
NBCH_WD40
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
122593514
NCBI-ProteinID:
XP_043621868
LinkDB
All DBs
Position
3:27150015..27157266
Genome browser
AA seq
423 aa
AA seq
DB search
MGKDEEDMRGEMEERLINEEYKVWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCSNGKVQIIQ
QINHEGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDIQGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE
YLFGSCGDDQYVHIWDLRSPSVTKPSQSVMAHQSEVNCLSFNPFNEWVFATGSTDKTVKL
FDLRKINSALHTFDSHKEEVFQVGWNPQCETILASCCLGRRLMVWDLSRINQEQTPEDAE
DGPPELLFIHGGHTSKVSDFSWNPCEDWIVASVAEDNILQIWQMAENIYHDEDDMPAEES
RGA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatgaagaagatatgaggggtgaaatggaagagcgtctaataaacgaagaa
tacaaagtatggaagaaaaacaccccttttttatacgatttggttatcacccacgcgctc
gagtggccttcgttgactgtcgagtggcttcccgaccgcgacgagccagctggcaaagat
tattctgttcagaagatgattcttgggacccacacttctgagaatgagcctaattattta
atgttggctcaggttcagctgcctcttgaagatgctgaatatgatgctcgacattatgat
gatgacaggtctgattttggtggatttggttgctctaatggcaaggtacaaattatacag
caaataaatcatgaaggagaggtgaacagggctcgttatatgcctcaaaaccctttcatt
attgccacaaaaacagtcagtgcagaagtctatgtatttgattatagcaaacacccatct
aagcctcctctagatggagcgtgcagtcctgatttaagattacggggccacaacactgag
gggtatggcctatcatggagtaagtttaagcagggtcatttgctgagcggttctgatgat
gctcagatttgcttatgggacattcaaggaacccccaaaaataaatcgcttgatgcgatg
caaatattcaaggttcatgatggtgttgtagaagatgtagcttggcatttgaggcatgaa
tatttatttggttcatgtggggatgaccaatacgtgcacatatgggatctccgatctcca
tcagttaccaagccttcccaaagcgtcatggctcatcaaagtgaggttaattgcttatca
ttcaatccttttaacgagtgggtttttgcaaccggatcaacagacaagaccgtgaagctg
tttgatttaagaaaaatcaactctgctctccacacctttgattctcacaaggaggaggtg
ttccaagttggatggaatccacaatgcgagacaattttagcttcatgctgtcttggtagg
agactcatggtgtgggatcttagtaggattaaccaggaacaaacaccagaggatgctgaa
gatggcccaccagaactgctctttatccatggtggacacacaagtaaagtttcagatttc
tcatggaacccatgtgaagactggattgttgctagtgttgcagaagataacatacttcaa
atatggcagatggctgaaaatatataccatgatgaagatgatatgcctgccgaggaatcc
cgaggtgcttaa
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