Erigeron canadensis (horseweed): 122593919
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Entry
122593919 CDS
T07610
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122593919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122593919
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122593919
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
FapA
ATG17_like
Prefoldin_2
Motif
Other DBs
NCBI-GeneID:
122593919
NCBI-ProteinID:
XP_043622316
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Position
3:40624234..40630895
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AA seq
662 aa
AA seq
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MASGFSFSTTSSSTSPFSFASSSSSSSSTSSPFSLSTNPNPTFGFSAASTPAFGTTSSAS
TSSFGGSTLFGTSTSASTTPSIFGSGSVFGTPSNTTTNNNTLTNFNFNSNSPFATTTTAS
TGISFASTAFGTTPSAFPAFGTPTSSSISTATNTNVSSAPGFSLFNATTAAAISTSSAAP
AFSLSTASSTSAVPSFSFSTSSAPAATSFSFANASASSGLQLSPSLSSGLKAGSTAGTTT
ANVSAASTPAFTAFGVTSSASTTASTPAFSAFSVTSSASTTSSTPAFSAFAVTSSASTTS
STPAFSAFAVTSPASTTTKTPALSGFGVTSSAATTTTSTQAITGFGVTSSASTTTAATPV
GSVLTFTSPTTAASTSTGTTSSFLGFQTSAKTSGSLTSASQPQSTAATSFLGIPASTTTI
STITATTAQSSSALVVSSSSGTTTSVNAPVVSAPKLPSEITGKTVEEIIKEWNVELQERT
GKFRKQANAIAEWDKRILQNRDVLLKLEAEVAKVVETQSNLERQLELIETHQQEVDKSLQ
SVEEEAERIYKDEHGLLLDDEVASTRDAMYEQAEFVEREMEQMTEQIKSVIQTLNANQAG
ELEGTDGMTPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLAKQGSAADRELIGPKFWL
TR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcggtttctcattctcaacaacatcctcgtcgacatctccattctcattcgca
tcatcatcgtcgtcgtcatcttcaacctcatctccattttcactttccacaaaccctaac
cctactttcggcttcagcgctgcctccacccccgctttcggtactacctcttctgccagt
acgtcgtcgtttggtggctccactttgttcggtacctccacttcagcttccaccactcca
tctattttcggttcaggttctgttttcggtactccttcaaatactactactaataataat
actcttactaattttaactttaattcaaattccccgttcgcaacaacgacaactgctagt
actggtattagttttgcctcaactgcatttggaactacaccatctgcatttccggcattc
gggacacctactagcagctcgatatcgactgctacgaatacgaatgtatcttctgctcca
ggattttcgttattcaatgctacaaccgctgcggctatttcaacttcttctgcagctcct
gccttttcgctctcgactgcatcatctacctctgctgtgccatcgttttcattttccacc
agttcggctcctgctgctactagtttctcttttgcgaatgcgtctgcctcgtccgggctg
cagttgtctccgagtttgagttctggtttgaaagctggttctaccgcaggaactaccact
gctaatgttagtgctgcgtccacacctgcgtttactgcatttggcgtgacatcatcggct
tctactacagcttccacacccgccttttctgcatttagtgtgacgtcatcggcttctact
acatcttccacacccgccttttctgcatttgctgtgacatcatcagcttctactacatct
tccacacccgccttttctgcatttgctgtgacatcaccggcttctactacaaccaagaca
cctgctttgtctggatttggtgtaacttcatctgcagctactactacgacttccacacag
gcaattactggatttggtgtaacttcttctgctagtaccaccacagctgcgacacctgtt
ggatctgtgctaacttttacgagtcctactactgctgcttctacttcaacggggacgaca
agttctttcttgggatttcaaacatctgctaaaacttcgggttctcttacatcagcatca
cagccacaatccacagctgctacctctttcttgggcattcctgcttcaacaactaccatt
tcgactattacagccactactgctcaatcatcatccgcgcttgtcgtttcttccagtagt
gggactactacaagtgtcaatgcacctgtagtctccgcgccgaaattaccatctgaaatt
actggaaagaccgttgaagagatcatcaaggagtggaatgtggagctccaggagcggact
ggcaagttcagaaaacaagctaatgctatagctgagtgggacaagagaatcttgcagaac
cgggatgttcttctcaaactagaggcagaagttgcaaaagttgttgagacccaatcaaac
cttgagcgacagttagagctgattgagactcatcaacaagaggttgacaagtccttacaa
agtgtggaagaagaggctgagagaatatacaaagacgagcatggtctacttcttgatgat
gaagtagcttcgaccagggatgcaatgtatgagcaggctgaatttgttgagagagagatg
gaacagatgacagaacaaataaagtctgttattcagactcttaatgccaatcaggctgga
gaacttgaaggaaccgatggtatgacccctctggatgtcgttgttcggatccttaacaat
caattaagctcattaatgtggatcgatgaaaaggccgaagagttctcttcacgcattcaa
aaactggcaaagcaaggttctgctgctgatcgagagctgataggtccaaagttctggctt
actcgataa
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