Erigeron canadensis (horseweed): 122594233
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Entry
122594233 CDS
T07610
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122594233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122594233
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122594233
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122594233
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
Motif
Other DBs
NCBI-GeneID:
122594233
NCBI-ProteinID:
XP_043622637
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All DBs
Position
3:20109697..20118524
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AA seq
637 aa
AA seq
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MYKQKNVVLNHWLPPFPMVRRGRFLCSETSKFFNQKQTPTHRPIKQVTKSNFSDSLSQLK
TQISGSDFVAVSLQKTGSYSSPWHRILPFDTAEIAYLKAKYAAERFQILQFAVCPFSIRA
DANHYKLIAHPFNFHLFPRDELKLGMPCYSFSCQPSYIASMAKEDFDFNVCIYDGISYLS
RAQETAAKHLTGNPVSSNYAVQPSTTRSVADNVFVERIKSRVRNWISACKRSDMRSEDAL
VSSLRRLILGGEEYGSRPSLNIDVCSERQVQLVFEMVKSHYSNVVPLAITSKGGGTQFVR
VVLTSSQEDRELLKKELRNMEEEQSRRLCGFREVIDFISASQKPIVAHNLLNVFHADFTF
IHSKFLYPLPPTMDEFTSSLHSAFPDILDVNHLMKEISPLTKYSSLPAATSYLKRNFFAP
IKMVIPQKGSMEESKNHGHGVVRISELFAKLCFILRILPQAEYHNPDGPSLKRYTNVFSP
DSNNFQDSDEADDISIWTNNPMKISINNLVFLWGFRSGTSAGKLKNLLSKSHNLLSEDHA
FDVRLVDNSCAVIVFWKDGLSEWFLDAIDSGDGLRELAAEGMMAAGYDTYKRICESEILG
VDLADSLAEFDRISEAHTKEPQEVYWNSDLMINFDDL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcaaaaaaatgtggttctgaaccattggctgccgccatttccaatggtgcga
agagggcgcttcttgtgcagtgaaacatccaagtttttcaaccaaaaacaaacgcctacc
caccggccaataaaacaagttacaaaatccaatttctccgattcactatcccaacttaaa
acccaaatatccggttccgatttcgtggcggtttcgttgcagaaaacgggtagttattcg
tcgccgtggcatcgtattctgccctttgacacggctgaaatcgcatacttgaaagctaaa
tatgctgctgaaagatttcagattttgcagtttgctgtttgccctttttcaattagggct
gatgctaatcattataagcttattgctcacccgttcaacttccatttgttcccacgggat
gagctaaaactagggatgccatgttatagcttttcatgccaaccatcgtatatagcttca
atggctaaagaagattttgatttcaatgtttgcatatatgatggtatatcatacttgtcc
agagcacaagaaacagcggcaaaacatttgacaggaaatccagtttcaagtaattatgcg
gtccaaccttcaaccactcgctcagttgcagataatgtgtttgttgaaaggattaaatcc
agggttcggaactggatcagtgcttgtaaacgttcagacatgagatctgaagatgcttta
gttagttctcttaggagacttatattaggaggtgaagagtatggatcaagaccatcttta
aatatagatgtttgcagcgaacgtcaagtacagctcgtatttgagatggtgaagtctcat
tattcaaatgttgtacctttggcaatcacctcaaaaggaggaggaactcaatttgttcgg
gttgttttgacaagttcacaagaagatagggaacttttaaagaaagagcttagaaacatg
gaagaggaacaaagcagacgtctgtgtggctttcgagaagtgattgattttatttctgct
tctcagaaacctatagttgcccacaacttactcaatgtgtttcatgcagattttacattt
atacattccaaatttctatatccactcccacccacgatggatgagttcacaagctcgctg
cattcagccttccctgacatacttgacgtcaatcatctaatgaaggaaatcagccctcta
actaaatatagcagcttacctgcagctacgtcttacttgaaaagaaatttctttgcacct
attaaaatggtgattcctcaaaaaggtagcatggaggaaagcaagaatcatggtcatggt
gtggtgagaataagcgagttatttgctaaactctgcttcatcctaaggatcctgccacaa
gccgaataccacaaccctgacgggccttctcttaaacgctacacaaatgttttcagtccg
gattccaacaatttccaagactctgatgaggccgatgacatcagcatatggactaataat
ccaatgaaaatcagcatcaacaatctggttttcctttggggtttcagaagtggcacatct
gctggtaaattgaagaatttgctctctaagtctcacaatctgttgtctgaagatcatgct
tttgatgttcggctagtggacaatagttgtgctgttattgtgttctggaaagatggactg
tcagaatggtttcttgatgctattgattctggagatgggcttagggaactggcggcagaa
gggatgatggctgcaggctatgacacatataagcgaatttgtgaatccgagatattaggt
gtagatttggctgattcgttagcggagtttgataggatatcggaggctcatacaaaggag
cctcaagaagtatactggaatagtgacctgatgattaactttgatgatctctga
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