Erigeron canadensis (horseweed): 122594247
Help
Entry
122594247 CDS
T07610
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122594247
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122594247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Beta_helix_3
NosD
Motif
Other DBs
NCBI-GeneID:
122594247
NCBI-ProteinID:
XP_043622653
LinkDB
All DBs
Position
3:complement(21284631..21286109)
Genome browser
AA seq
395 aa
AA seq
DB search
MYNLKTIFLVIIFLVSSAEAGTATYNVTSFGAKGNGYTDCTKAFLGAWSAACSTTKSATI
YVPTGNYLIATPITFAGERCYSSAITIRIYGTLVAPSNYDAIASSGDWIRFHRVNHVTIS
GGTLDARGGSLWSCKTSHKSCPEGATTLGIYNSKNIVISGLKSVNSQKFHILLDACTTVK
LQGVSISAASVSPNTDGIHLMASTDVTISSTKVATGDDCISIGPGNSNLWIEKVACGPGH
GISIGSLGWELDEPGVKNVTVTTATFRGTQNGVRIKTWARASHGFVTGVLFQHLTMVNVQ
NPIIIEQRYCPNNNNCPNQVSGIKISNVVYQDIHGTSASQVAVKLDCSQGNPCSAIRLQD
VNLNYIRGNGDQQVMSSCAYAAGTASGIQHPTGCL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtataacctgaaaactatttttcttgtcatcatttttctagtctcatcagctgaagca
ggaacggctacatacaatgtgacaagttttggagccaaaggaaatggctacacggattgc
acgaaggcctttctcggtgcttggtctgctgcatgttccacaaccaagtcagccacaata
tacgtgcccacggggaactacttaatagcaactcccattacttttgctggtgaaagatgc
tatagtagtgccatcacgatacgcatttatggcacccttgttgctccttctaactatgac
gccattgccagctctggtgactggatcagatttcatagagtgaaccatgttaccatttct
ggcggtacgcttgatgccagagggggttctctttggtcctgcaaaacctcccacaaaagc
tgtccggaaggagccacgactctaggaatatacaattcgaagaacatagtgataagcggg
ttgaagtcggtaaacagccagaagttccacattctgttagacgcatgcacgacagtcaaa
ttacagggagtaagtatatcagcagctagtgttagtcctaacacagatggaattcactta
atggcgtcgactgatgtcaccatatcgagtactaaagttgcaacaggggatgattgtatc
tctataggtcctggtaacagtaatctctggatagaaaaggtggcttgtggtccaggtcat
ggtatcagcattgggagtctaggatgggaattagatgaaccaggtgtcaaaaacgtaaca
gtgacaacagcaacttttcgaggaactcagaatggtgtgagaataaagacatgggcaagg
gctagccatggatttgtaactggtgttcttttccagcatctgaccatggtcaacgttcaa
aatccgattatcattgaacaaaggtactgcccgaataacaataactgccccaatcaggtg
tcaggaataaagatcagtaacgtagtgtatcaggatatccacggaacatcagccagtcaa
gttgcagtgaaactggattgtagccaggggaacccatgcagtgcaataagactacaagat
gtaaacctaaactacattcgtggcaatggtgatcaacaagtgatgtcatcatgtgcctat
gctgccgggactgcatctggcatacaacatccaacgggctgtctctaa
DBGET
integrated database retrieval system
