Erigeron canadensis (horseweed): 122594469
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Entry
122594469 CDS
T07610
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122594469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122594469
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
122594469
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
122594469
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
122594469
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
122594469
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122594469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
AAA_17
CPT
G-alpha
Zeta_toxin
NPHP3_N
AAA_22
nSTAND3
ABC_tran
AAA_29
MeaB
AAA_5
AAA
MCM
AAA_16
Motif
Other DBs
NCBI-GeneID:
122594469
NCBI-ProteinID:
XP_043622854
LinkDB
All DBs
Position
3:21526429..21531215
Genome browser
AA seq
727 aa
AA seq
DB search
MEFEDEMMKSKGKVEEEKEEGNNNKKRKGIILILVGAPGSGKSTFCEHVIRVSTRPWVRV
CQDSIGNGKAGTKAQCLALSATSLKDGKSVLIDRCNLNKEQRADFIKLKDSHQVDVHAVV
LDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGFTRITFCQNEIDVQ
AAMDTYGALSSSDSLPSGCFGEKTTDTKVQLGIMKFLKRVDAPSKVSSDKTIPGPSIETI
DVKPSVNEGQEPSETHSLDGIPTLAFPSISTADFQFDIERASDIIVETVEEFVNKIGNGR
LVLVDLSRGSKILSLVKGKAAIKNIDPKKFFTFVGDITKLRSGGLHCNVIANAANWRLKP
GGGGVNAAIFDAAGPDLDIATKKRAGSLAPGKAIAVPLPSTSKLFSKEGVTHVIHVLGPN
MNSKRPNCLKDDYNMGCKVLREAYSSLFENFVSIVRTQGKLSDHDISNCDQKLRKEDSAN
VAEKNGKFKGYIEENESKRLCLTNGKEKASNNANTGGSMNKDWGSWAQALYNIAMIPEKH
RNVVIEISDDVVVLNDVYPKAQKHLLVLARAEGLDRLADVGQEHLSTLRTMHAVGLKWAE
TFIKENESLVFRLGYHSAPSMRQLHLHVISQDFDSKHLKNKKHWNSFNSPFFRDSEDVIQ
EISEQGKPTLNDDEKLLSMELRCNRCRSAHPNIPRLKSHIAICKSPFPTHLLQNGRLLHA
PMKDDAC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgaagatgaaatgatgaaatctaaaggaaaagtagaagaagaaaaagaagaa
ggaaataataataaaaagagaaagggcataatattgatattagtgggtgcacctggaagt
ggaaaatcaacattttgtgaacatgttattcgggtttctacccgaccttgggtccgggtt
tgtcaggacagtataggcaatggcaaagctggaacaaaagcacaatgtctagcactttct
gccacctcattaaaagatggaaaaagtgtgcttattgatagatgcaatctcaataaagaa
caacgggccgattttattaagctaaaagactctcaccaagtagacgtccatgctgtggtt
cttgatcttcccgcaaagctttgtatatcacgctctgtaaaacgaactgggcatgaaggc
aatttacaaggtggaaaagccgctgctgttgtgaatcgaatgctgcaaaagaaagaactt
ccgaaactgaatgaagggtttacccgaataacattttgtcaaaatgaaattgatgtccaa
gctgctatggatacatatggagcactttcttcttcagatagccttccttctggctgtttt
ggagagaaaactacagatactaaagttcaacttggtattatgaagttcttaaaaagagta
gatgctccaagtaaagtatcatctgataagactattcccgggccatcaattgaaactatt
gatgtaaaaccttctgttaatgaaggtcaagagccaagtgaaacacattctttagatggt
attccaactttagcatttccttccatatctactgcagatttccaatttgatattgaaaga
gcttctgatataatagttgagactgttgaagaatttgtaaacaagattgggaatggaagg
cttgttttagtggacttgtctcgtgggtcaaagatattgtctttagtgaagggtaaggct
gctataaagaatattgacccaaaaaagtttttcacatttgtgggcgatattacaaagctt
cggtcaggaggccttcattgcaatgtgatagcaaatgctgcaaactggagacttaaaccc
ggtggtggaggtgtaaatgccgctatatttgatgctgcaggtccagaccttgatattgca
accaaaaaacgagccggatctcttgctcctggaaaagcaattgcagttcctcttccttca
acttctaaattgttttctaaagaaggtgtaacacatgtcatacatgtgcttggcccaaat
atgaattctaaaagaccaaattgcctcaaggacgactataatatgggttgcaaagttctt
cgtgaagcttactcatctctatttgaaaattttgtatctattgtgagaactcaagggaag
ttatctgatcatgatatttcaaactgtgatcagaagctcaggaaagaggatagtgccaac
gtcgctgagaaaaacgggaaatttaaagggtatatagaagaaaatgaatctaaaaggttg
tgtttgactaatgggaaggagaaagcaagtaataatgcaaacactggtggaagcatgaac
aaggattggggatcatgggctcaagcactttacaacattgccatgattcccgagaaacat
aggaatgttgtcattgaaatttcagatgatgttgtggtgctgaatgatgtgtacccaaag
gcacaaaagcaccttttagtgcttgcacgggctgaaggtcttgatcgtcttgcagatgta
ggacaggaacacctttctacattgaggacaatgcatgccgtgggtttgaaatgggctgaa
acattcataaaggaaaatgaatcattagtgttccggcttggataccattcggcaccctca
atgagacaactacaccttcatgtgataagccaggattttgattcaaaacatctcaaaaac
aagaagcactggaattcattcaattctccattctttagggactcggaagatgtgatacaa
gaaatcagtgagcagggtaaacctacattaaatgatgatgaaaaattattgtcaatggag
ttgagatgcaaccgctgtagaagcgcacatcctaacattcctcggctcaaatcacatatc
gccatttgcaaatcaccttttcctactcacttactgcagaatggccggttactgcatgca
cctatgaaagatgatgcttgttag
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