Erigeron canadensis (horseweed): 122594809
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Entry
122594809 CDS
T07610
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122594809
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122594809
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
122594809
NCBI-ProteinID:
XP_043623059
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Position
1:52437489..52443016
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AA seq
722 aa
AA seq
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MVILLSFCHISFGPKYSSADTFDVTAYGAIGDGDTDDTDAFVRAWADVCGDNSGDPTLVI
PPDRTFLLKCVAFSGPCNSDSILIQLLGGITAPKSLDGWQGCDTAKGSLISFASVQGLTI
AGPGQIDGQGSLWWPGSEGNYTLTGPTCDCPSMLHFHKCDGLQLRDTTYINSPRSHISIN
VCDGVEVGNVHISAPENSPNTDGFDISESSNINIYDSVIESGDDCFAINTGTHNINITGV
LCGPGHGISIGSLGKNGGYATVEQVLVQNCNLTGTKNGVRIKTFPGGTGYARGIIFQDIQ
LDNVKNPIIIDQHYCDNMENAECPAPGVLMVIMLCFCYISFLQKVTSAASFDVTSYGAIG
DGNTDDTNAFVRAWADMCGDESKDPTLIVPSAKTFLIKCVSFDGPCKSPRVHVKLLGNIT
APKRLDGWEGCETKGYLIVFASVHGLTITGPGQIDGQGSIWWGGLQPTGPTCDCPSMLRF
DRCDNLQLKGTTHINSPKSHVSIFGCHGVEVGNLHISAPGNSPNTDGIDISWSSHVHIHD
STIQSGDDCVAISGGTYDINVTRVVCGPGHGISIGSLGKNGGYTTVEQVLVQHCNITGTQ
NGLRIKTVPYGTGFARKIVFQDIMLENVGNPIIIDQHYCTNMDNADCPAPPTAPAVQVSE
VTYKNVHGSSTSNQAITLNCSGKFNCTGVVTNKVRITGEQVFSYCKNVHGKFIQTTPSIT
CD
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggtaatcttgttgagtttttgtcacatttcatttggcccgaaatattcaagtgcagac
acctttgatgtaacggcgtatggtgccataggagatggagataccgatgatactgatgct
tttgttagagcatgggcggatgtatgtggagataactcaggagacccgacgttggtcata
ccaccagacagaacttttttgttaaaatgtgtggcattttctggtccttgcaactctgat
agtattcttattcagcttttgggcggaattacagcacccaagagtctggatggatggcaa
ggttgtgataccgccaaagggtctttgataagttttgcatctgttcaaggactcaccatc
gctggacctggccaaatagatggccagggttccctttggtggcctggaagtgaaggaaac
tatacgcttacgggtccaacttgtgattgtccgtcgatgttacattttcataaatgtgat
ggtctccaattaagagatacaacatatatcaacagtccaaggagccatattagtatcaat
gtttgtgatggagtagaagttggaaacgttcatatttctgcgcctgaaaacagcccaaat
actgatggatttgatattagcgagtcttctaacattaatatctacgactctgtaattgaa
agtggtgacgattgttttgctattaatactggcacacataatatcaacattacaggagtc
ttgtgtggacctgggcacggcataagcattgggagtcttggaaagaatggtggttatgca
acagtggaacaggttttggtacagaattgtaatctcactggaaccaaaaatggagtacga
atcaagacattcccgggtggaacggggtatgctagggggattatatttcaagacattcaa
cttgataatgttaaaaatccgattataattgatcaacactactgcgataatatggaaaat
gccgaatgccctgcaccaggtgtcttgatggtgatcatgttgtgtttttgttacatttca
tttctccaaaaagtcacaagtgcggcctcatttgatgtaacgtcttatggtgcaatagga
gatgggaatacagatgacaccaatgcttttgtacgggcttgggcagatatgtgtggcgat
gagtcaaaagacccgacattgatcgtaccttcagccaaaacatttttaataaaatgtgtg
tcgtttgatggtccatgcaagtctcccagagttcatgtaaagcttttgggtaacattacc
gcccccaagaggctagatggatgggaaggttgcgaaacaaaagggtatttgatagttttt
gcatcggtccacgggctcaccatcactggacctggccaaatagatggtcagggttccatc
tggtggggaggattacagccaacaggtccaacttgtgattgcccgtcgatgttacgcttt
gatagatgtgacaaccttcaactcaaaggtacaacacacataaatagtccaaagagtcat
gttagcatttttggttgtcatggtgtggaagtgggaaatcttcatatctcagcacccgga
aatagcccaaatactgatggaatcgacatcagttggtcatctcatgttcatatccacgac
tctacgattcaaagcggtgatgattgtgtggcaattagtggtggaacttatgatatcaat
gtaacgagggtcgtttgtggacctggtcatggcataagcatcggaagccttgggaagaac
ggtggttatacgacagtggaacaagtactagtacaacactgtaacatcactggaacacaa
aatggattgcgaattaaaacagtaccgtatggaacggggttcgctaggaagattgtattt
caagacattatgttggaaaatgttggaaatccaataataattgatcaacattactgcact
aatatggacaatgctgattgtcctgcaccaccgaccgcaccagcagtgcaagtgagtgag
gtaacgtataagaatgtacatggatcgtcgacatcaaatcaagcgattacattaaattgc
agcgggaaattcaactgtactggagtcgtaaccaacaaagttagaatcaccggagaacaa
gtattttcgtattgcaaaaatgttcatggaaagtttattcaaaccacaccttctattact
tgtgattag
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