Erigeron canadensis (horseweed): 122594821
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Entry
122594821 CDS
T07610
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122594821
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122594821
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF6745
Motif
Other DBs
NCBI-GeneID:
122594821
NCBI-ProteinID:
XP_043623069
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Position
1:52445062..52448871
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AA seq
434 aa
AA seq
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MQCDLRSVVAGRDVGGYQWRVVVVASIGDGEVWKFFLQGCLMVVLLSICYILASPKTTSA
AKFDVTSYGAKGDRKTDDTNAFLDAWADLCKSKSPKPTLIIPSKKTFLVGPVEFSGSCES
STIHVKIMGNIVAPKTMKGWKNCVENRFWIVFTMVQGLTIDGPGQIDGQGSLWWGQTELS
NMCERPTALHFHECNGLRLSGTTHLNSPFLHISIVNCQDVDIGNLQIIAPENSPNTDGID
ISASSYINIHDSHIGTGDDCVAINGGIYNINVTRVFCGPGHGISIGSLGENGGYDTVEKV
RVENCNITRTKNGLRIKTVPGGTGYAKGIVYQDIHLVNVENPIIIDQHYCSNYEDAFCPA
PPHEPAVQVSDVSYTNIHGSSASQQAITFDCSGKFKCTGLSTWNVGITGPAGDIAYCKNA
QGKFVSTSPRVRCH
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgcgacttgcgaagtgtggtagcgggtcgagatgtgggaggttatcagtggcgg
gtggtggtagtagctagcataggggatggcgaggtgtggaagttctttttgcagggttgc
ttgatggtagttcttttgagcatttgttacattttggctagcccgaaaaccactagcgca
gccaaattcgacgtaacatcttatggcgcaaaaggagataggaagacggacgataccaat
gctttccttgatgcatgggctgacttatgtaaatctaaatcgccaaagccgacattgatc
attccttcaaagaagacgtttttagtcggccctgtcgaattcagtggttcatgcgagtcc
tctacgatacacgtcaagattatgggcaacatcgtagcaccaaagacaatgaaaggatgg
aaaaattgtgtagaaaatcgattttggatagttttcacaatggtgcaagggctcacaatc
gatggacctggccaaatcgatggtcagggatcgctctggtggggacagacggaattatcc
aatatgtgtgagcgcccaacggcgctacatttccatgaatgcaatgggcttcgtctaagt
ggcacaacacatctcaacagcccatttcttcatattagcattgttaattgccaagatgta
gatatcggaaatcttcaaattatagcaccagaaaacagcccaaatactgatggaatcgac
atcagtgcttcatcttatattaatattcatgactctcacattgggactggtgatgattgt
gtggctattaacggtggcatatataatatcaatgtaacaagggtgttttgcggacctggc
cacggcataagtatcggaagccttggggaaaatggtggttacgacacagtcgaaaaagta
cgtgtagaaaattgtaacatcacccggacaaagaatggattacgaatcaagacagtgccg
ggtggaacggggtatgctaaggggattgtatatcaagacattcatttggtaaatgtcgaa
aacccaatcataatcgatcaacattactgctccaattatgaagacgctttttgccctgca
ccgccacatgaaccagcagtacaagtcagcgatgtttcgtatacgaatatacatgggtca
tcagcgtctcagcaagcgattacttttgactgcagcggcaagtttaagtgtacgggactg
tctacatggaacgtcggaattactggaccagcaggcgatattgcttactgcaaaaatgct
caagggaaatttgtttctactagcccaagagttagatgccattag
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