Erigeron canadensis (horseweed): 122594867
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Entry
122594867 CDS
T07610
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03030
DNA replication
ecad03410
Base excision repair
ecad03420
Nucleotide excision repair
ecad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122594867
03410 Base excision repair
122594867
03420 Nucleotide excision repair
122594867
03430 Mismatch repair
122594867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecad03032
]
122594867
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122594867
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122594867
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122594867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_22
Rad17
AAA_30
PTCB-BRCT
AAA_19
AAA_assoc_2
AAA_5
AAA_18
BRCT_2
Gp44_lid
nSTAND3
RuvB_N
AAA_28
DNAX_ATPase_lid
AAA_14
AAA_24
Zeta_toxin
AAA_17
AAA_2
AAA_16
Sigma54_activ_2
NTPase_1
AAA_33
TsaE
Motif
Other DBs
NCBI-GeneID:
122594867
NCBI-ProteinID:
XP_043623103
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All DBs
Position
4:complement(27568085..27573731)
Genome browser
AA seq
991 aa
AA seq
DB search
MQPDIRKWFMKQHDKGNDNGNSPKSAKPALAIPGKVPTAKDAAPSSVKSVQGGQESSGRR
RTSKYFANEKQKEEDVTEVSGVAAKRKVQQSSADVKPPPVKKAYIINNDDDDDDFVPSKT
GKSSVESTPSKKLKSGSGKGVPRATAKESDDADVVDDVPTPKSAGRGRGRRGGSVGGRST
KVDLDEVDDDDDAKEVKSGGRGRGGRGGSSAAGGGRGGGRGGFMAFGERKDPPHKGEKEV
PEGSSDCLAGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSISKKTNYLLCDEDIGGRKS
AKAKELGTRFLTEDGLFDMIRASNRSKVATKEDNKKQVDKIAATQPKASPQKAVNKTYEP
PVKGKATTHAGPGVSPAKRKKQIVGSSLPWTEKYKPKVPNDIIGNQSLVKQLHDWLTHWN
DNFLNGASKGKGKKQSDSGAKKAILLSGTPGIGKTTSAKLVSQMLGYQTIEVNASDSRGK
ADAKIEKGIGSSTANSVKELVSNQSLSVDMNHTKHPKAVLIMDEVDGMSAGDRGGVADLI
SSIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLAQIASSEGVQVNEI
ALEELAERVNGDMRMALNQLQYMSLSMSNIKFDDIRQRLLSSSKDEDISPFTAVDKLFGY
NAGKLRMDERFDLSMSDPDLVPLLIQENYINYRPSALGKDENGVKRMNLLARAADSIASG
DIINVQIRRYRQWQLSQSSSLTSAIIPAALLRGQREILAQGERNFNRFGGWLGKNSTMGK
NYRLLDDVHVHLQSSLQFNLGRSTLCLDYLSLLLKHMTDPLKMLPKDEAVEKVVEFMDTY
SINQEDFESLVLMSKFQGHPNPLDGVQPAVKSALTKAYKIGSKSRVIRTADMITLPGIKK
APKKRVAAMLEPVDDGPGEEGDATAENEENNSDAEDLEGTDEGEEKPKVDINSLSSKGIQ
IQTESKATGTKRAPAGRGRGGGAASSSKRKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccggatattagaaagtggttcatgaagcaacatgataaaggaaacgataatggc
aactcaccaaagtctgcaaaacccgcacttgcaataccaggaaaagtgccgactgctaaa
gacgccgcaccatcatctgtgaaatctgtacaaggaggtcaagaaagttcagggagacgg
agaacgagtaaatattttgccaatgaaaaacaaaaagaagaggatgtcaccgaagtatct
ggagttgcagcgaaaagaaaggtacaacagtcttcggcggatgtaaagcctccacctgta
aagaaggcgtacattataaataatgacgatgatgatgatgattttgtaccttccaagact
ggaaaaagctctgttgagtcaactccgagtaagaaactgaaaagtggatcaggtaagggg
gttcctcgtgcgactgcgaaagaaagtgatgatgcagatgttgttgatgatgtcccgact
cctaaatctgctggaagaggtcgtggtagaagaggtgggtcagttggcggaagaagtaca
aaggtagaccttgatgaggttgatgatgacgacgatgctaaagaggttaagtctggtggt
cgtggacgaggtggaaggggtggttcatcggcggcaggtggtggaaggggtggtggacgt
ggcggttttatggcttttggtgaaagaaaagatcctcctcataaaggagaaaaggaagtt
cctgaaggctcttctgattgtttagctggtttgacttttgtcatcagtggtacacttgat
agtttggaaagagaagaggctgaagatttgattaaacgctatggtggccgtgttaccgga
tcaattagcaagaaaacgaattacctcttatgcgatgaagatattgggggaaggaagtca
gcaaaagcaaaagagctaggtacacgctttcttaccgaggatgggctgtttgatatgatt
cgtgcatctaatcgttcaaaagttgccactaaagaagacaataaaaaacaagtggacaag
attgctgctactcaaccaaaggccagtcctcagaaagcagtaaataagacttatgaacct
cctgtcaagggtaaagctaccacacatgctggtccaggtgtttctccagctaagcggaaa
aaacaaattgttggctcttcattgccatggacggagaagtacaaaccaaaagttccaaat
gacattatagggaaccagtcactggtgaagcagcttcatgattggttaactcattggaat
gataattttctgaatggtgccagcaaggggaaggggaaaaagcagagtgattcaggggca
aagaaggcaatactattaagcggtacacctggcatagggaagactacatccgcaaagttg
gttagtcagatgcttggttaccagactattgaggttaatgccagtgacagccgtggaaag
gctgatgccaaaattgaaaagggaattggtagtagtactgctaattccgtaaaagaactc
gtcagtaatcaatccctgagtgttgacatgaatcacacgaagcatccaaaggcggtgctg
attatggatgaggttgatggtatgtctgctggagataggggtggcgtggctgatctaatt
tccagcatcaaaatatccaaaattcctataatttgtatatgcaatgatcgatacagtcag
aagttaaagagccttgtcaattactgcttactcctaagcttccgcaaaccaacaaaacaa
cagatggcaaagagattggcacaaattgccagttcagaaggtgttcaagtaaatgagatt
gcgcttgaggaacttgctgaaagagttaatggagatatgcgcatggctctgaatcaattg
caatacatgagtctttccatgtccaacattaagtttgacgacataagacaacgacttctt
agtagctccaaggatgaggatatatctccctttacagcagttgataagctctttggttac
aatgctggtaaattgaggatggatgagcggtttgatcttagcatgagtgatccagatcta
gtacctcttcttatacaggaaaattatattaattacaggccaagtgcgcttggaaaagat
gaaaatggggtcaagagaatgaacttacttgcacgtgctgctgattccattgcaagtggg
gatataatcaatgtacaaataagaagataccgtcaatggcagctgtctcaaagtagttct
cttacgtctgctataatcccggctgctctgctgcgtggacaaagggaaatacttgcacag
ggtgaacggaactttaacagatttggagggtggcttggaaagaactctacaatgggaaag
aattacaggctccttgacgatgtgcatgttcatctgcaatcatctctacaattcaacttg
ggcaggtcaaccttgtgccttgattatctatctcttcttctaaaacacatgactgatcca
ctgaagatgcttcctaaggatgaagctgttgaaaaggttgtggagtttatggatacatac
tccattaaccaggaggactttgagtcgctggtgcttatgtctaagtttcaggggcatcca
aatccactggatggtgttcagcctgctgtgaagtctgcattaacaaaagcatacaagata
ggaagcaagtcacgtgtgattcgtacggcagacatgatcacacttccaggcattaaaaaa
gctccaaagaaacgagtcgcagcgatgctagaaccagtagatgatggtccaggggaagag
ggtgatgccactgcagaaaatgaagaaaacaactcggatgcagaggatttagaaggtaca
gacgagggagaggaaaagccaaaagtggacattaacagtcttagttccaaaggaattcaa
atacaaacggagtcaaaggctacaggcacaaagagggcccctgcaggtaggggaagaggg
ggcggtgctgctagttcttccaaacgaaaaaggtag
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