Erigeron canadensis (horseweed): 122595208
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Entry
122595208 CDS
T07610
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122595208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122595208
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122595208
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
LRR_6
F-box-like
LRR_8
F-box
LRR_13
Motif
Other DBs
NCBI-GeneID:
122595208
NCBI-ProteinID:
XP_043623479
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Position
4:complement(18477883..18483733)
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AA seq
588 aa
AA seq
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MDQNTKRSKTVNRVNSVHPSELTRFPDELLERVLSLINSNKDRSSVSLVCKDWYHAERWS
RRHVFIGNCYSVTPEIVVARFPKIQSLTLKGKPRFSDFNLVPDDWGADVFPWLDVLATAY
SSSLEELRLKRMVVSDESLEFLATKFVGFKKLSLLSCDGFSTDGLKAIATHCKNLTELDI
QENGIDDLGGHWLSCFPESLTSLEILNFASLNSEVSFDALEKLISRCKSLRVLKVNRNVS
LDQLQKLLSHAPQLVELGTGTFMQELVSGPVKELKNTFSKCKKLQTLSGFWDATPLYLPV
IFPACASLTFLNLSYATLLSVELANLLSHCKSLRRLWLLDTVGDKGLEAVGSCCPLLEEL
RVFPADPFDQEIFLGVTESGFVAVSRGCPKLHYVLYFCRQMTNAAVATIARNCPDFTHFR
LCIMSPGQPDYLTKEPMDEGFGAIVKTCTKLQRLAVSGLLTDRTFEYIGKYAKNLETLSV
AFAGSSDLGMECVLGGCPKLKKLEIRDCPFGNAALLSGLTKYESMRSLWMSACNLTMNGC
RELAKEKPRLNVEVMKDEGSDDSQAHKLYVYRTVAGPRRDAPPFVLTL
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacacaaaacgatctaaaacagtcaaccgagtcaactcagtacacccatcc
gagttaacccggtttccagacgagttactagaacgagttctgtcactaataaactcaaac
aaagaccgtagctcagtatctcttgtatgcaaagattggtaccacgcagaacgatggagc
aggcgccacgtgttcatcggaaactgttactcagtgacacccgagattgtcgtcgctaga
tttccaaagattcaaagtttgacccttaaaggaaaaccaagattttctgattttaatttg
gtccctgatgattggggtgctgatgtttttccttggttggatgttttagcgacggcttat
tcttcgtcgctagaagaattaaggttgaaaagaatggttgttagtgacgaaagtttggag
tttttagcgacgaaatttgttgggtttaagaagttgtcgctattaagttgtgatgggttt
agtactgatgggcttaaagctattgccactcattgcaagaacttgacagaattggatatc
caagaaaatgggattgatgatcttggtggccattggttaagttgcttcccagaaagctta
acttcactagaaattcttaactttgcaagcttgaacagtgaagtcagttttgacgccctt
gaaaagctcatttctagatgtaaatctttacgggttttaaaagttaatcgcaatgtaagt
ttggatcaattgcaaaagcttctttcacatgctcctcaactggtggaacttggtactgga
accttcatgcaagaactggtctcaggtccagtcaaggagctcaaaaatacattcagtaaa
tgtaaaaaactacaaactctttcgggtttttgggatgccactccactttatctcccagtt
atatttcctgcttgtgccagtctcacgtttttgaatttgagctacgcaactttacttagt
gtggaacttgccaatcttctttctcactgtaaaagtcttcgtcgcctctggcttcttgat
actgtaggtgataagggcctagaagctgttggatcttgctgcccattacttgaagaactt
agagtttttccagccgacccgtttgaccaagaaatcttccttggtgtgactgaatccgga
tttgtagcagtttcccgtggctgcccaaaactccattatgttctatacttttgtcgccaa
atgacaaacgctgctgttgccaccattgccagaaactgcccggatttcactcacttccgt
ctttgcataatgagcccaggtcaacctgattatttgaccaaggagccaatggacgaagga
tttggcgccattgtcaagacttgtactaagcttcaacggcttgcagtgtctggtctctta
actgaccgtacattcgagtacattggaaaatacgccaaaaatctagaaacactatccgtg
gcttttgcaggcagtagtgatctgggaatggagtgtgtattgggaggctgcccaaaactg
aagaagcttgagatacgagactgcccgtttgggaatgctgctttgctttcgggtttgacc
aaatacgagtcaatgcgatccttatggatgtctgcttgtaatctgactatgaatggttgt
agggaattggctaaagagaaacctaggttaaatgttgaggtgatgaaagacgaaggtagt
gatgatagccaggctcataaactttatgtctatcgaaccgtggctggaccacgaagggat
gcaccaccatttgttctcaccctctga
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