Erigeron canadensis (horseweed): 122595323
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Entry
122595323 CDS
T07610
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122595323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122595323
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122595323
Spliceosome [BR:
ecad03041
]
Complex C
Other components
Step II factors
122595323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Cas3-like_C_2
TsaE
Sigma54_activ_2
AAA_16
PhoH
Flavi_DEAD
GIPC1_GH2
ABC_tran
T2SSE
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
122595323
NCBI-ProteinID:
XP_043623603
LinkDB
All DBs
Position
4:complement(44803813..44808978)
Genome browser
AA seq
1165 aa
AA seq
DB search
MATKKEPSLKKLEYYSLVSKVCTELESHLGFTDKTLAEFITSIGRKCHSVDEFDLKLKEN
GAEMPDYFVRTLLTIIHAILPPKTKDTTAKDKDKDGWKALNIADTKDRVKELEKEIEMEA
KEKKRNHEYPRDEISRDGRSRDRDRDGRRNRDGDRDRDRDRDYRSGRNGDRYDRDDRGAR
DRDRDRDRDRGEKKIYGGKSDDIELYQVYKGRVTRVMDSGCFVQILDVRGKEGLVHVSQM
ATRRIANAKDVVKRDQEVYVKVISVSGHKLSLSMRDVDQTSGRDLLPLKKSGGGEDDDLS
RGNPSRGLGTGGGSMSRTGLSGITITEEDVGVPSRRPLKKMSSPERWEANQLIASGVLSV
KEYPMFDEETNDGMVYQDEGGDEELEVELNEDEPAFLQGQSHYSMDMSPVKIFKNPEGSL
SRAAALQTALIKERREVRDQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSA
YDMPEWKKDSYAKALTFGQRSKLSLQEQRQSLPIYKLKKELVQAVNDNQVLVVIGETGSG
KTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYSIRFEDCTC
PETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTMHTDVLFGLLKGLVNRRPDLRL
IVTSATLDAEKFSAYFFNCNIFTIPGRTFPVEILYTKQPESDYVDAALITVMQIHLTEPE
GDILVFLTGQEEIDHACQCLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKR
KVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGFESLVITPISQASAKQRAGRAGR
TGPGKCYRLYTESAFNNEMSPTSIPEIQRINLGLITLNLKAMGINDLLSFDFMDPPSPQA
LISALEQLYTLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMIT
TGNVFYRPREKQAQADQKKAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLR
RAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTIVENQPV
YIHPSSALFQRQPDWVIYHELVMTTKEYMREACVVDPKWLVELAPRFFKVSDPTKMSKRK
RQERIEPLYDRYNEPNSWRLSKRRA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaaaaagagccaagtttaaagaaactggagtactattcactggtatccaaa
gtctgtacggaactcgaatcccacctgggtttcaccgacaaaaccttagccgaattcatt
acatcgataggtcgaaaatgccattctgttgatgagtttgaccttaagctcaaagaaaac
ggcgccgagatgcccgattactttgtccgaaccctactcaccatcatccacgccatcttg
ccccccaaaaccaaagatactactgctaaggataaggataaggacggctggaaagctctt
aatattgccgataccaaggaccgtgtcaaggagttggagaaggagattgagatggaagcc
aaggagaagaaacggaaccacgagtatccacgggatgagattagtagagatggtaggagt
cgggatagagatagagatggtaggagaaaccgtgatggcgacagggacagggatagagat
cgggattacagaagtggtcgcaatggcgacaggtatgatagagatgacagaggcgctcga
gatagggacagggacagggacagggacaggggtgagaagaagatttatggagggaaatcg
gacgacattgagctctatcaggtctataaagggagggtgactcgggttatggacagcggc
tgttttgtgcagattcttgatgtccggggaaaagagggtttggttcacgtgtcacagatg
gccactagacgaatagcaaatgccaaagatgtggttaagcgtgatcaggaggtttatgtt
aaagtcatttcagtttcgggccacaagttgtccttgtccatgagggatgttgatcagact
tctgggagggacctgttgccgttgaagaagagtggtggtggtgaggatgatgatttgtcg
agagggaacccgtctaggggattgggtactggtggtggttcaatgtctaggacggggtta
tctgggataacgattactgaagaggatgttggggttccttcaaggagaccattgaagaaa
atgagttccccagagaggtgggaggcgaaccagctcattgcttctggtgttttgagtgtg
aaagaatatccgatgtttgacgaagaaactaatgatggaatggtttatcaggatgaaggt
ggggatgaagagcttgaggtggagctaaatgaagacgagcctgcgtttctgcaaggacag
agtcattattcaatggatatgtccccagtgaagatctttaaaaaccctgagggttcattg
agtcgcgcagcagctttacagactgctttgataaaggaaaggagagaagtgagggaccag
cagcagagaacgatgctcgattctatcccgaaagatctgaatcgaccgtgggaagatcct
atgcctgagtcaggggaaaggcatttagcacaggagttgaggggagttgggttgtcagca
tatgacatgcccgaatggaagaaagattcttatgctaaagcattaacatttggtcaaaga
tcaaagctttctcttcaagaacagaggcagagcttgcctatatacaaactgaagaaggaa
ttggttcaggctgtgaatgataaccaagttttggttgttattggtgaaacggggtcaggg
aagacaactcaggtgacccaatatctagctgaggcaggttacaccaccaaaggtaaaata
ggatgtacccaaccccgaagggtggctgcaatgtctgtggccaagagggtggctgaagag
tttggctgtcgtttaggtgaggaagtaggatactccattcgttttgaggactgtacctgc
ccggaaaccgtgattaagtacatgactgatggtatgttgctgagggaaattctggtcgat
gaaaacctgtctcagtattcagtggtaatgcttgatgaagctcatgagagaacaatgcat
accgatgtcctctttgggttattgaaaggtctcgtgaatagaagacccgacctccgatta
atagtcacttccgccacattagatgctgagaagttttctgcctatttcttcaactgcaat
attttcacaattccgggaagaacatttccggtggagatactttacactaaacagcctgaa
agtgattacgttgatgcagctttgattactgtaatgcagatccacttgaccgaacccgag
ggcgatatacttgtctttttgaccgggcaggaggagatcgatcatgcttgccagtgttta
tatgagaggatgaaaggtttgggtaaaaatgtgccggaattgatcatattaccggtttat
agtgcccttccaagtgaaatgcaatccaggatttttgaacctgcaccgccagggaagaga
aaggtggtggttgccactaatattgctgaagcatctttgaccattgatgggatcttctat
gtcattgaccctggttttgccaagcagaatgtgtacaatccgaaacagggttttgaatca
ctcgtcatcactccgatatcccaggcatcagctaagcaacgggctgggcgtgcaggacgt
acaggaccaggaaagtgctacagattatacaccgagagcgcatttaacaatgaaatgtcg
cctacatcaattccagaaattcaaagaataaatcttggattgattacattaaatttgaaa
gcaatggggataaatgatctattgtcttttgatttcatggacccaccttcccctcaagct
ctgatttctgcactggaacagctatatactcttggagctcttgatgaagaagggcttcta
accaaactgggtagaaagatggcggagttcccccttgaacctccgttatctaaaatgctc
cttgctagtgttgatttgggttgcagtgatgaaatattgaccatcattgccatgattaca
actggaaacgttttttacagacctagggaaaaacaagcccaagctgatcaaaagaaagcc
aagtttttccaacccgagggtgaccatcttactttacttgctgtttatgaggcttggaaa
gccaagaacttttcgggaccatggtgtttcgagaattttgtccagtcaagatcgcttagg
agggcccaagatgtcaggaagcagctgttatccattatggacaaatacaaattggatgtt
gtgagtgccggaaagaacttcaccaagatacggaaggcaattacagccggatttttcttc
catgctgcccggaaagaccctcaagagggataccgtaccatagttgagaaccagccagtt
tacatacacccgagcagcgctcttttccaaagacaaccagattgggtcatctaccatgag
cttgtgatgacaacaaaagaatacatgcgtgaggcctgtgttgtggatccaaaatggcta
gttgaattggcaccaaggttcttcaaggtgtctgatcccacgaagatgtccaaacgaaaa
cgacaagaacggatcgagcctctatatgataggtataatgaacccaattcgtggcgtttg
agcaagcgacgggcttga
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integrated database retrieval system
