Erigeron canadensis (horseweed): 122595442
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Entry
122595442 CDS
T07610
Name
(RefSeq) FACT complex subunit SSRP1-like
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122595442
03036 Chromosome and associated proteins [BR:
ecad03036
]
122595442
Transcription factors [BR:
ecad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
122595442
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
122595442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
YABBY
Ccdc124
CDC45
YL1
Motif
Other DBs
NCBI-GeneID:
122595442
NCBI-ProteinID:
XP_043623736
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Position
4:complement(22313309..22324038)
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AA seq
640 aa
AA seq
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MADGHSFNNVSLGGRGGSNPGQLKVHSGGVLWKKQGGGKAVEVDRSDILGLTWMKVPRTN
QLAVRTKDGLKYKFTGFRDQDVISLTNFFQNTCGLKTDEKQLSVSGKNWGEVGLNGNMLS
FNVGQKEAFEISLADVSQTQLQGKTDVILEFHVDDTTGANEKDSLMELSFHVPSNNTQFV
GDENRPPAQVFREKIMSMADVGAGGEEAVVTFEGIAILTPRGRYNVELHLSFLRLQGQAN
DFKIQFSSVVRVFVLPKSNQPHTFVVVTLDPPIRKGQTMYPHIVLQFETDYVVESTLTMN
PDLFATKYRDKLEPSYKGLIHEVFTMVLRGLSGTKLTRPGKFRSCQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILYDEIDYVEFERHAAGGANMHYFDLSIRLKTEQEHLFRNIQ
RNEYHNLFDFIKSKGLRIMNLGAAKPTDGVAAVLQDEDDDNVDPHLERIKNEQGLDESDE
EDEDFVLDKDDGGSPTDDSGGEDSDASESGGEMEKPLKKETKKEPTASKASLSKKRPKGG
EDDVSKKRKPKKKKDPNAPKRAMSAFMYFSQMERENVKRDNPNIAFQEMGRVLGERWNKL
SAEEKEPYEAKALADKKRYQDELSGYNPKVGNSGNATDSD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccactcgttcaataatgtatcacttggaggtcgagggggctcgaatcca
ggtcagctaaaagttcattcaggtggtgtattgtggaagaaacaaggaggtggcaaagct
gttgaagtcgataggtctgacatcttgggacttacatggatgaaagttccccggactaat
cagcttgccgtcagaactaaagatggtctgaaatacaagttcactggttttcgtgaccag
gatgtcattagcctgaccaactttttccagaatacttgtggcttaaaaacagacgaaaag
cagctttctgttagtgggaaaaactggggagaagttggcttgaatggcaacatgctgtct
ttcaatgttggtcagaaagaagcatttgaaatctccttagctgatgtgtcccagacacag
cttcaaggaaagactgatgtcatattggaatttcatgtggatgacacaactggtgcaaac
gagaaagattcattgatggagctaagcttccatgtgccatctaacaacacacagtttgtt
ggtgatgaaaatcgtccacctgcacaggtctttcgtgaaaaaataatgtcaatggcagat
gttggtgctggaggtgaggaggctgtggtcacatttgagggcattgctattcttactccc
agaggtcgatacaatgttgaacttcatttatcctttttgaggctgcaagggcaagccaac
gattttaaaattcagttcagcagtgtagttcgcgtgtttgtattgccaaagtcaaatcag
ccacatacattcgttgttgttacccttgatccacctatccgtaaaggccaaacgatgtat
ccacacatagtgttgcagtttgaaacggattatgttgtggaaagcaccttgacaatgaat
ccagatctatttgctaccaagtacagggacaagttggaaccatcgtataagggactcatt
catgaagtatttacgatggtattgagaggcttgtctggaacaaaactcacgaggccagga
aaatttcgtagttgtcaggatggttatgctgtcaagtcatccttaaaagctgaagatggt
gttctttatccactcgaaaagagctttttctttctgccaaaacctcctactcttattcta
tatgatgagattgattatgtggaatttgaaagacatgctgctggaggagcaaatatgcat
tactttgatctttctattagactgaagacagaacaagaacatcttttccggaacattcag
agaaacgaatatcataacctcttcgatttcatcaagtcaaaaggtcttagaattatgaat
cttggtgcagccaaaccaacagatggtgttgccgctgtgctacaagatgaggatgatgat
aacgttgacccacatcttgagcggataaagaatgaacaaggattagatgaaagtgatgag
gaggacgaggattttgttcttgacaaggatgatggaggctctccaactgatgattctggg
ggagaggattctgatgctagtgaaagtggcggcgaaatggagaaacctctgaagaaggaa
acaaagaaagagcctactgcttctaaagcctctctaagtaagaagagacccaaaggtggt
gaagatgatgtgtcaaaaaagagaaaacccaagaagaaaaaagaccctaatgctcctaag
agagcaatgagtgctttcatgtatttctcacagatggaaagagagaatgtgaagagggac
aaccctaatattgcctttcaagaaatggggagggtgctcggtgaacggtggaacaagtta
tcagctgaggagaaggaaccctatgaagccaaggctctggcagataagaagcgataccaa
gatgaactcagtggctacaatccaaaagtgggaaattcagggaatgcaaccgactctgac
taa
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