Erigeron canadensis (horseweed): 122595620
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Entry
122595620 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122595620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122595620
03041 Spliceosome [BR:
ecad03041
]
122595620
03009 Ribosome biogenesis [BR:
ecad03009
]
122595620
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122595620
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122595620
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122595620
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122595620
Complex C
U4/U6.U5 tri-SnRNP related factors
122595620
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122595620
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122595620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122595620
NCBI-ProteinID:
XP_043623960
LinkDB
All DBs
Position
4:complement(41299970..41307579)
Genome browser
AA seq
991 aa
AA seq
DB search
MENLTASAEKRKQPEESSETVDTEVKNQELASKKQRVVARTCVHEVAVPSGYASTKDETI
HGTLSDPAYNGKMAKTYPFVLDPFQQISVSCLERKESVLVSAHTSAGKTAVAEYAIAMAF
RDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRG
SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNI
HKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFLKLQDTFVKQNVAATS
KSSGRIAKGGNASGGSDIYKIVKMIMEKKFQPVIIFSFSRRECEQHAMAMTKLDFNSQEE
KDVVEQVFKNAIQCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLV
KALFATETFAMGLNMPAKTVVFTSVRKWDGDSHRYVGSGEYIQMSGRAGRRGKDERGICI
IMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMRRAEGQFTAEHVIKNSFHQFQY
EKTLPDIGKKVAKLEEEVTKLDASGEADVAEYHKLKLEISELEKKMMAEITRPERALYFL
LPGRLVKVQEAGTDWGWGVVVNVVKKPAPPLGSLPPSSRGSSYIVDTLLHCSIGSSESGS
RPKPCPPRSGQKGEMHVVPVQLPLISALSKLRISIPSDLRPIEARQNVLLAVEELEKRFP
QGLPRLNPVKDMGIEEPEFVNLVNQIEKLGQELLSHPLHKSQDENQIQCFKRKAEVNHEI
QQLKTKMRDSQLQKFRDELKNRSRVLKKLGHIDAEGIVQVKGRAACLIDTGDELLVTELM
FNGTFNDLDHHQVAALASCFIQGDKSSEQIQLRTELAKPLQQLQDSARRIAEIQHECKLE
VNVDEYVEAVVRPYLMDVIYCWSKGSSFSEVIQMTDIFEGSIIRLARRLDEFLNQLRAAA
HAVGEAGLEDKFAAASDSLRRGIMFANSLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcttactgcaagtgctgaaaaaaggaagcaaccagaggaaagttcagagaca
gttgatactgaagtcaagaaccaagaattggcatcaaagaagcaacgagttgtggcacgg
acatgtgtacacgaggtagcagttccaagtgggtatgcttccactaaagacgaaacaatt
catgggactttatcagatccagcttataatgggaagatggctaaaacctacccatttgtt
cttgacccgtttcagcaaatatctgtgtcatgtttggagcggaaagaatcagttcttgta
tcagctcatacatctgctggaaaaactgctgttgctgagtatgcaatagctatggctttt
agagacaaacaaagggttatctatacttctccattgaaagctttgagcaatcagaaatac
agagaattgagtcaggagttttctgatgttggactgatgacaggtgatgtcacattatct
ccaaatgccagttgcctagtcatgacgaccgagattcttaggggaatgctttacagagga
tctgaggttttaaaagaagttgcatgggttatatttgatgagattcactatatgaaggat
cgtgaacgtggggtagtttgggaagaaagtatcatatttttgcccccagctatcaaaatg
gtttttctttcggcaactatgtcaaatgctactgagtttgcagaatggatttgcaacata
cataaacagccatgccatgtagtctacactgattttagacccactcctctgcagcattat
gtgttccctataggtggttcagggttgtatcttgtagtggacgagaatgagcagttcaga
gaggacaatttcttgaagctgcaagacacttttgtcaagcagaatgttgctgcaactagt
aaatcaagtgggagaattgctaaaggaggaaatgcttctggcggatctgatatatacaaa
atcgtcaagatgatcatggaaaaaaaatttcaacccgttataatcttcagctttagcaga
agagagtgtgagcaacatgcaatggcaatgaccaaacttgatttcaatagccaggaagag
aaagatgtggtggagcaagtcttcaaaaatgcaatacaatgccttagtgaggaagataga
aacctcccagcaattgagttgatgttgcctttgctacaacgaggcattgctgttcatcat
tctggccttcttcctattatcaaggaactggtagaactcttgttccaagaaggccttgtg
aaagcactttttgccacagagacatttgcaatggggctgaacatgcctgctaaaacagtt
gtttttaccagtgttagaaaatgggatggtgacagccatcggtatgtaggatctggtgag
tatattcagatgagtggaagagctggacgtcggggcaaagatgaacgtggtatatgtatc
ataatgattgatgaacagatggagatgaatactcttaaggacatggtccttgggaaacct
gctcctttagtcagtactttcaggttgagctactactcaatattgaacttaatgagacga
gccgagggccaatttactgcagaacatgttatcaaaaattcctttcaccaatttcagtat
gaaaagacgttacctgatattgggaaaaaggttgccaagttagaagaggaagtaactaag
cttgacgcatctggagaggcggatgttgctgaatatcataaacttaagcttgaaatctct
gaactggagaagaagatgatggcagaaataactaggcccgagagagctctatattttctt
ctacctggtaggctggttaaggttcaagaagctgggacagactggggctggggagtggtt
gtgaatgttgtgaaaaaacctgccccaccactaggatccttacccccttcttcgcgtggt
agtagttatatagttgacactttgcttcattgttctattggttcgagcgaaagtggttct
cgtccaaagccatgtcctccacgttctgggcagaaaggtgaaatgcatgtggttcctgtg
caattgcccttgatttcagcattgagcaagcttagaatatcaattccttctgatctccgt
cctattgaggcacgacaaaatgtgctattggcagtagaggagcttgaaaaacgctttcca
caaggccttccaagacttaaccccgtcaaggacatgggcatagaagaacctgagtttgtc
aacttggtaaatcagattgaaaaacttggccaagaattgctttctcatccattgcacaag
tctcaagatgaaaatcaaatccagtgtttcaagagaaaagcagaagtgaatcatgaaatt
caacagttgaaaacaaaaatgcgtgattcacagcttcaaaagttccgagacgaacttaaa
aaccgatcacgggttttaaagaaactggggcatatcgatgctgaaggaatagttcaagtg
aagggacgtgcagcatgtttgattgacacaggggatgaactcttagtcactgaattgatg
tttaatggtacgttcaatgatctggatcatcatcaagttgctgcactggcaagttgcttt
attcaaggagacaaatctagtgaacaaatacaattaagaacagaacttgccaaaccatta
caacagcttcaagatagtgcacgtagaatagcagagatacaacatgaatgcaaattggaa
gtcaacgtcgatgaatatgtggaggcagttgttagaccatacttgatggatgtaatatat
tgttggtcaaaaggatcatctttttctgaagttatacaaatgactgatatcttcgagggg
agtattattagacttgctagaagactcgatgagtttttgaatcagctgcgtgctgctgct
catgctgtcggagaagcaggtttagaggacaagtttgctgccgccagtgacagccttcgt
agggggattatgtttgccaattctctatatttgtga
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