Erigeron canadensis (horseweed): 122595785
Help
Entry
122595785 CDS
T07610
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122595785
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
122595785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
122595785
NCBI-ProteinID:
XP_043624163
LinkDB
All DBs
Position
4:complement(44013956..44017021)
Genome browser
AA seq
410 aa
AA seq
DB search
MQVQLIILLVGMLSTTLASTSLSRISLVSTTIFDVTKFGAKGDGKSDDSQAFVKAWKAAC
QAQRIGRSIIVIPARKTFLLKPVSFSGPCKPSRVFVQVSGNIVGPAKKSDWSGYHLDSWL
SFSMVNGLTVSGNGRIDGQGPMWWKNACVGNPPPGTTCHAPVALMFKRCNNLRLNGLTHI
NSPRVHITVTTCKGVILSNLHIIAPETSPNTDGINIASSTNVNIRDSIIGTGDDCIAISG
GSSNIKISGIMCGPGHGISIGALGKGGVDVVENIQVQNCTMTKTLAGVRIKSWQGGRGYA
RKISFKAIKFDAVYNPIMIDQYYCPTQKDCITSTSAVKISDISFIGIAGTSQMDNVVNLS
CSKSVACTNIVMDSVYISSSVTPKRKVFGTCINAHGRVSHVKPSINCLKP
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttcagttgatcatcttgctagtaggcatgttgtccactactttggcttcaact
agtctctctagaattagtcttgtgtcgaccaccatcttcgatgtgacaaaatttggagct
aagggagatgggaagtccgacgactcccaggcatttgtgaaggcatggaaggcagcatgc
caagcgcaacgaatcggtaggagtataatagtcataccagcaaggaagacgtttttgttg
aagccagtttctttcagtggcccctgcaagccctcccgtgtttttgtgcaggtatcagga
aacattgttggtccagcaaagaaatccgattggagtggttatcatctcgattcatggctt
tctttttcgatggtcaacggtcttacagtgagtggtaatggacgaatagatggtcaaggc
cccatgtggtggaaaaatgcctgtgttggtaatcccccaccaggtacaacttgccatgct
ccagttgcattaatgtttaaaagatgcaacaacctgcgactcaatggtttaacacatata
aacagtccacgagtgcatatcacagtgaccacttgtaaaggtgtcatcttgtctaatctg
cacatcattgcccccgaaacaagcccaaatactgatggcattaacatagctagctccacc
aatgtcaatatacgcgactccatcattggaacaggtgacgattgtattgctattagtgga
ggttcatctaatatcaaaattagcgggatcatgtgtgggccgggccatggaattagcatt
ggggcactagggaaaggaggagttgatgtggtagaaaatatacaggttcaaaactgtacc
atgacaaaaaccttggctggagtaaggatcaaatcttggcagggaggaaggggttatgca
agaaagatttcatttaaggccatcaagtttgatgcagtgtataaccctatcatgatagat
caatactattgtcccacccaaaaggactgtataacctctacatcagctgtgaagataagc
gatatatcgttcattggaatcgcggggacatcacaaatggacaatgtggtcaatctaagt
tgcagtaaaagtgtggcatgcaccaatatagtaatggatagtgtgtatatcagctcatca
gtaactccaaaaagaaaggtttttggaacatgtattaatgcccatggaagagttagccat
gtgaaaccttctattaattgcctcaagccttag
DBGET
integrated database retrieval system
