Erigeron canadensis (horseweed): 122595899
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Entry
122595899 CDS
T07610
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04120
Ubiquitin mediated proteolysis
ecad04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122595899
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122595899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122595899
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122595899
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122595899
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122595899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
EIF3I
zf-C3HC4_2
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
zf-C3HC4
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WD40_like
WD40_RFWD3
zf-RING_2
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_DCAF12
zf-C3HC4_4
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_IFT140_1st
U-box
RING_XB3-XBAT31
zf-RING_10
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
122595899
NCBI-ProteinID:
XP_043624308
LinkDB
All DBs
Position
4:complement(9798745..9818303)
Genome browser
AA seq
665 aa
AA seq
DB search
MTTGVGGGGGADGAVGGGGGIIVPSVKSEPPPEQTPAEEQAAETVDRDVLCPICMQIIKD
AFLTICGHNFCYMCIATHLQNKSDCPCCAHYLTPSQLFPNFLLNKLLMKASACQIAKGAS
PVEQLRLAFQQGCDVSIKELDSLLVLLTEKKKRMEQEEAESNLQILHEFLNCLRRQKLEE
LNEIQKDLQYMKEDINAVERYRIELHRARERCSVKIRMIGDDSTVKTSWPSLMDKRNSGS
IPMGAGTPQSRFPDVQGPVSSLAHQRKDACSGSDSQNTEVGVSVARKRRVHAQFNDLQEC
YLQKRRHWAKQVQKQEERDDNPIKKDGYHAGLRDFQSVLSTFTRYSRLRVIAELRHGDLF
HSADIISSIEFDRDDELFATAGVSRRIKVFEFASVVNEQADVQCPVVEMSTRSKLSCLSW
NKYTKSHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSLDFSRTEPTMLVSGSDDCKV
KIWCTRQEASVLNIDMKANICSVKYNPGSSFHVAVGSADHHIHYYDLRNISQPLHIFSGH
RKAVSYVKFLSNHELASASTDSTLRLWDVKQNIPLRTFRGHVNEKNFVGLTVNSEYIACG
SETNEVFVYHKAISRPAAWHGFSSDANEGEEPGSYFTSAVCWKNDSPTMITANSRGTIKV
LVLAE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactacgggagtcggcggtggtggtggtgctgatggtgcagtaggaggcggaggggga
attattgttccttcggtcaaatcggagccaccgccggaacaaacgccggcggaggaacag
gcggcggagacggtggatagagatgtattgtgtccgatatgcatgcagataataaaagat
gcatttttaacaatatgtggacataatttctgttatatgtgtattgctactcatcttcag
aataaaagtgattgtccttgttgtgctcattatcttaccccctctcaactctttcctaac
ttcttacttaataagctattgatgaaggcttcagcttgtcaaatagcaaaaggtgcttct
cctgttgagcaactacgcctagcatttcagcagggatgtgatgtatcaatcaaggagctg
gatagcctcttagttcttctcacagagaagaaaaaaagaatggagcaagaagaagcggaa
tcaaatctgcagattttgcatgaatttttgaattgcttaaggaggcaaaagcttgaagag
ctaaatgagatacaaaaagatctccagtacatgaaggaagatataaatgctgtagagaga
tataggatagaattacatcgagctagggaaagatgttcagtaaaaataaggatgattggt
gatgattctactgtaaaaacatcatggccatcattgatggataaacgcaatagcggcagt
atccctatgggggctggaactccacaaagtcggtttcctgatgtacagggtcctgtaagt
tctcttgcacatcagagaaaggatgcttgcagcgggtcagattcacaaaatactgaagta
ggagtctctgtggcaagaaagaggagagtccatgcacagttcaatgacttgcaagagtgt
tacctgcaaaagcggagacattgggcaaaacaggtgcagaagcaggaagaaagggatgat
aatccgataaaaaaagatggatatcatgcaggactcagggacttccagtctgtactttcg
acatttacacgatacagtcgattgagagtcattgctgaacttaggcacggagatcttttt
cactctgctgatattatatcaagcatagaattcgaccgggatgatgagctttttgctaca
gctggagtttcaagacgcatcaaggtctttgagtttgcatctgtggtaaatgaacaagca
gatgtccaatgtcctgtggtggaaatgtcaacacgctccaagcttagttgtttgagctgg
aacaagtacaccaaaagtcacatagccagtagtgattatgagggtattgtgaccgtctgg
gatgtaaccactcgccagagtgtaatggagtatgaagagcatgagaagcgagcttggagt
cttgatttttcacgtactgagcctacaatgctagtatctggaagtgatgattgtaaggtg
aagatatggtgtacaagacaggaagcaagtgttcttaacattgatatgaaagcaaatatc
tgctctgtaaaatataatcctggatctagctttcatgttgcagtgggttcagcagatcat
cacattcattattatgacttaagaaatataagccaaccattgcatatttttagtgggcat
cggaaagctgtttcatacgtaaagttcttgtctaaccatgagctagcttctgcatctact
gacagcaccttgcgcttgtgggatgtcaaacaaaatatcccactgcgcacttttagagga
catgtcaacgagaaaaactttgtcggcctaactgtaaatagtgaatacattgcatgtggc
agcgagactaacgaagtttttgtgtaccataaggctatttcaagacccgcagcatggcat
ggatttagttctgatgcaaatgaaggcgaggagccagggtcttatttcacgagtgccgtt
tgttggaaaaacgatagcccgacaatgataacggcgaatagtcgaggtacaattaaagtt
ctggttctcgctgagtag
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