KEGG   Erigeron canadensis (horseweed): 122595954
Entry
122595954         CDS       T07610                                 
Name
(RefSeq) cullin-4-like isoform X1
  KO
K10609  cullin 4
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03420  Nucleotide excision repair
ecad04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122595954
  09124 Replication and repair
   03420 Nucleotide excision repair
    122595954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ecad04121]
    122595954
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122595954
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ecad04147]
    122595954
Ubiquitin system [BR:ecad04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     122595954
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122595954
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122595954
Exosome [BR:ecad04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   122595954
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 122595954
NCBI-ProteinID: XP_043624375
LinkDB
Position
4:27374652..27385538
AA seq 742 aa
MSQPTLKTHLNSTHKRPSISSPTVPMKKPKTQAAVAFSVDPLSPETNAGSGRATLFRKIP
LPTQPTKKFVIKLTKAKPALPTNFEENTWAILKSAISSIFLKQPDFCYLEKLYQAVNDLC
LHKMGGSLYQRIEKECEAHISIALQSLIGKSEDLGVFLSLVGKTWQDFCDQLLMIRGIAL
YLDRTYAKQTTNVKSIWNMGLQLFRKNLSIASEVEHKTVFGLLKLIDNERLGEAVDRTLL
SHILKMFTALGIYSESFEKPFLVCTSDFYAAEGGKYMQQSDVADYMKHVELRLHEEHDRC
VLYLDTSTRKPLLATAERQLLEHHIDVIPEKGGFVMLIDGSRIQDLQRMYMLFSRVNAIE
YLRKALGSYIRKTGQGLVTDEEKDKDMVFSLLEFKSSLDKIWEDSFSKNDSFCYTIKEAF
EYLINIRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYK
KDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQA
RTKLLSGIEMSVHVLTTGYWPTYPLMDVRLPHELNVYQTVVLMLFNDAQKLSFEDIKDAT
SIEDKELRRTLQSLACGKVRVLQKAPKGRDVADNDYFMFDDAFTAPLYRIKVNAIQLKET
VEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPSDLKKRIE
SLIDREYLERDRNNPQIYNYLA
NT seq 2229 nt   +upstreamnt  +downstreamnt
atgtctcaacctacattgaaaacccacctcaattccacccacaaacgcccctctatttca
tcacctactgtccccatgaaaaaacccaaaactcaggccgccgttgcgttctccgtcgac
cctttatcgccggaaaccaatgctggaagtggacgcgccactttgttccgcaaaataccc
ttacccactcagcctaccaaaaagtttgtcatcaagcttactaaagctaagccggccctg
cctacaaactttgaggagaatacatgggcgatactgaaatcagctattagttccattttc
ttaaagcagccagatttttgctatttagaaaagctttatcaggctgtcaatgatctttgt
ttgcacaagatggggggaagtctctaccaacgtatagaaaaggagtgtgaagctcacata
tctatcgctttacaatctttgattggcaaaagtgaagacctgggtgttttcttatcactt
gtagggaaaacctggcaagatttttgtgaccaattgttaatgatacgaggaatagcattg
tatcttgaccgtacatatgccaaacaaactacaaatgtaaagtcaatatggaatatgggc
ttgcaacttttccgaaagaatttgtcaatagcttcagaagttgagcacaaaacagtattt
ggccttttgaagttgatcgacaatgagagactgggtgaagcagttgacaggacattgctt
agccatattctgaagatgttcacggcactgggaatctactcggagagttttgagaagcct
tttcttgtatgtacatcagatttttatgcagctgaaggaggaaagtacatgcagcaatca
gatgttgcagattatatgaaacatgtggagttaagattgcatgaagagcatgatagatgt
gtactctatcttgatactagtacaagaaagccattattagccactgctgaaagacaactc
cttgagcaccatattgatgtgatacctgaaaagggtggttttgtaatgctgatcgatggt
agtcgaattcaagatctccaaaggatgtatatgctcttttctagagtaaatgcaattgaa
tatctacgaaaagcccttggttcatatatccgaaaaacagggcagggcttggtaactgat
gaagaaaaagataaagacatggtattctccctcttggagtttaagtcatctcttgataaa
atatgggaagatagtttctcaaagaatgattctttttgctacacaatcaaggaagcattt
gagtatctcattaatatccgtcagaatcgtccagcggagttgattgccaagtttctggat
gagaagctccgtgctggaaataagggtacatcagaggaagaattggagggcactcttgat
aaagtcttagttttgttccgatttatacagggtaaggatgtgtttgaagctttctataag
aaggaccttgccaaaaggctactgctgggaaaaagtgcatccattgatgccgaaaagtct
atgatttctaagttaaaaactgaatgtggcagccagtttaccaacaaacttgaaggaatg
ttcaaggacatcgagttatcaaaagagataaatgaatctttcaagcaatcatctcaagct
aggacgaaactcctatcaggaattgaaatgagtgttcatgtcttgacaacggggtattgg
ccaacatatccactgatggatgttcgccttccccatgaattaaatgtgtatcagactgtt
gttttgatgctgttcaatgatgcacaaaagcttagttttgaagacattaaggatgctaca
agcattgaggacaaggaactaaggagaactctgcagtcccttgcttgtgggaaagttcgt
gttctccaaaaggctccaaaaggtagggatgtggcggacaatgattattttatgttcgat
gatgcatttactgctcctctttatcgtataaaggttaatgctatccagctgaaggaaact
gttgaagaaaacactagcacgacagaaagagtatttcaagatcgtcagtatcaggttgat
gctgctattgtaagaattatgaagaccaggaaagtgctgagtcacacacttttgattacc
gaactatttcagcagttgaaatttcctataaagccatccgacctaaagaaaaggatagaa
agcctcatcgacagggaatacctagagagagacagaaacaatcctcaaatatacaactac
ctagcataa

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