Erigeron canadensis (horseweed): 122596100
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Entry
122596100 CDS
T07610
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122596100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122596100
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122596100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_19
TPR_14
TPR_1
TPR_8
Coatomer_E
TPR_10
DUF627
TPR_17
PIN_4
Motif
Other DBs
NCBI-GeneID:
122596100
NCBI-ProteinID:
XP_043624554
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Position
4:39229447..39237522
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AA seq
805 aa
AA seq
DB search
MESAAANSNNSNSSSNNSKMMMMMDVSISDDVDLITETQTLAKEAYVMFQLGKYSDCLKL
LNQILDKKADDPKILHNIAIVENFQDGFSNPKRFLEALDNLKKRNERLAHSAGENAEALN
SMIKAAGNKGNSVAGNSASTINNAQGVSADDFDISMTMFNIAVILYHLHEYEKCSSILER
LYQNIEPLDERVARHVCLLLLDVSFVCHQASRAGEVINYLEKVGGNSLGGIQGDSGNFTQ
QQQLTNLVTKSTSAPSNVMISDPITSDSTVNVNGPESPLSRTLSEETLYESLMSTLDVSG
AQNLTRPSNDLTRTQADDSFITTSDLRLKVHLYKVWILILTRNLKAAKREVKLAMNIARG
KDYSLALFLKSQLEYARNNHRKAIKLLMASVSQTENGTSALYYNNLGCIYYQLGKYQTSA
VFFSKALSSGSQLRKEKPMKLFNYSQDKSVLFAYNCGLVYLASGKPLLAVRCFQQAGSVF
FKRPLLWLRIAECCIMFSEKKADIDVNVIGGGKWRQLVIEYGNSRSMVHVEPNLSLTFAK
SCLLNALHLLDCPDQSLPAGLNIKVVQGQGQVNSNGEVKESKAGNSALLQSSINEYEGLC
GKENQMILQAVLADLAFVYLELGNAVKALAAARCLLRLTECSRVYVFLGNVYAAEAYCLL
NQPKQASEHLSSYISGQSIIGLPYSQEDCDIWQARKTVDLEEPNSKNTPSVNQLLPQGSF
SSIFIKPEEARGVLLADMAAIAAAEGDLGRAQEAVSAALSILPSNPDVVLTATYIDLVRG
NTQDAVLRLKQCSRVRFLAGTLAEK
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggcagcggcgaacagtaacaacagcaacagtagtagcaataatagtaagatg
atgatgatgatggatgtatcgatatcggatgacgtggatttgataactgaaacgcaaacc
ctagccaaagaagcttatgtgatgtttcagttaggaaagtattcagattgtcttaagctc
ttgaatcagatccttgacaaaaaagctgatgatcctaagattcttcataacattgctatt
gtggagaacttccaagatggattctcaaatccaaagagatttttggaagcacttgataat
ctcaagaaacgaaatgagaggcttgctcattctgctggggaaaatgcagaggcgttgaac
agcatgattaaagctgcgggaaacaagggaaatagtgttgcgggcaattcagcctctacc
atcaataatgcccagggtgtttcagctgatgattttgatatatctatgacaatgtttaac
atagcagtcatcctctaccatctacatgaatatgagaagtgttcctccattttggagaga
ttatatcaaaatatcgaaccattagatgagagggtggcacgtcatgtgtgccttttgtta
ctggatgtttcttttgtatgccaccaggcttcaagagctggagaggtgatcaattacttg
gaaaaagtgggtggcaatagcttaggtgggattcagggtgattccggaaacttcactcag
caacagcagttaacgaatcttgtgacaaaatccacatcagcacccagcaacgtgatgata
tcggatccaatcacctctgattcgactgttaatgtaaatggccccgaaagtcctttatcg
cgaactctctcagaggaaacactttacgaatctttaatgtcaactctcgatgtgagtgga
gcccaaaaccttacgagaccttcaaatgatctcacaagaacacaagctgatgattctttc
attacaacatccgatctaaggctgaaagtgcatttatacaaagtttggattctgatcctt
acaagaaatcttaaagcagccaaacgtgaggtcaaattggccatgaacatagctcgcgga
aaagattattcactcgcattgttcctaaaatctcaactagagtatgctagaaataaccac
aggaaggcaataaagcttttaatggcgtcagtcagtcaaaccgagaatggaacttccgct
ctatattacaacaatcttggatgcatttattatcaacttggaaaataccagacatctgcc
gtctttttctcaaaggcattaagtagcggctctcaactaaggaaagaaaaacctatgaaa
ctgttcaattactcgcaggacaaatctgtcctttttgcatacaactgcgggttagtttat
ttggctagcgggaaaccattacttgcggttcgatgttttcaacaggcgggttcagttttc
ttcaagcggcctctcttatggcttcggattgccgagtgctgtataatgttttctgaaaag
aaagcggatatagacgttaatgttattggagggggaaaatggaggcaacttgttatagag
tacgggaattcaagaagcatggtacacgttgaaccgaatctttcactgacgtttgctaaa
agttgtcttctaaatgcattacacttgttggactgtcctgatcagtcactccctgctggt
ttgaatataaaagtggttcagggtcaaggtcaggtgaattcaaatggggaagtcaaagag
tcaaaggcggggaatagtgcgttgctgcagagctcaattaacgaatacgagggtctttgt
ggaaaagagaaccagatgattttgcaagctgtacttgctgacctggcgtttgtttacttg
gaactgggaaatgcagtgaaggcgttagctgccgctaggtgtctgttgagacttaccgaa
tgttctagagtttatgttttcctgggaaatgtgtatgcagctgaagcttattgtcttttg
aatcaacctaagcaagcttctgagcatttgtcgagttatatttcggggcaaagtataatc
ggattaccctacagccaagaggattgtgacatctggcaagcgaggaaaaccgtggatttg
gaggagcctaattccaagaataccccttccgttaatcaattgctgccacagggcagcttt
agctctatttttatcaagcctgaagaggctcgcggtgtcctgttggcagacatggctgcc
atagcagcggctgaaggtgaccttgggagggcacaggaggctgtctcagctgcattgtcg
attttaccaagcaaccctgatgttgttcttaccgcaacttatattgatctggtgcgtgga
aacactcaggacgcagtgttgaggttgaaacagtgcagccgtgtacggtttcttgcaggc
acattagcagagaaatga
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