KEGG   Erigeron canadensis (horseweed): 122596166
Entry
122596166         CDS       T07610                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03018  RNA degradation
ecad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122596166
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122596166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122596166
   03041 Spliceosome [BR:ecad03041]
    122596166
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122596166
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122596166
Spliceosome [BR:ecad03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122596166
SSDB
Motif
Pfam: LSM Hfq RimP_C
Other DBs
NCBI-GeneID: 122596166
NCBI-ProteinID: XP_043624632
LinkDB
Position
4:complement(22280693..22287973)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVSGTLKGYDQLLNLVLDEAVEFIRDADDPLKT
TDQTRSLGLIVCRGTAVMLVSPTDGTEEIANPFVQSDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggcaggaaggaaacagttttggatttagccaagtttgttgacaagggtgtccaa
gtcaagctcaccgggggaagacaagtgtcagggacgcttaaaggatatgatcagttgctg
aaccttgttctagatgaagctgttgagtttattagagatgctgatgatccactaaagact
actgatcaaactcgaagtcttggcttaatagtttgtaggggtactgccgtaatgcttgtt
tcacccactgatggtacagaggagattgctaatccatttgtccagtcagatggagcttaa

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