Erigeron canadensis (horseweed): 122596190
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Entry
122596190 CDS
T07610
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122596190
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecad04040
]
122596190
Ion channels [BR:
ecad04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122596190
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
122596190
NCBI-ProteinID:
XP_043624656
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Position
4:complement(39915378..39920820)
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AA seq
731 aa
AA seq
DB search
MLKCVSQSQFMRLDDLGSRSSSASSSIPLNKRGFEGISQPHHAAAIPFKSFKKGIEKGTE
RIRSIGRSLGFGVSRAVFAEDLKVSEKKIFDPQDKFLLTWNKFFVVSCILAVSIDPLFFY
LPVIDQSKSCLGMDRKMAIIVTTLRTIIDTFYLIHMALQFRTAYIAPSSRVFGRGELVIN
PAQIAKRYLRWYFIIDFLSVLPLPQIVIWRYLQRSRGSDVLSTKQALFFMVLLQYIPRFA
RIVPLTSELKRTAGVIAETAWAGAAYYLLLYMLASHIVGAFWYLLSVERNDTCWRRACKE
SGHDANLLYCGNDHMVGYDRWSNISRSVLTTACSPDGDNPPFDFGIFQQALSSNIVSSKT
FVSKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSITLAISGLILFALLIGNMQTYLQSL
TIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEESLVQSLPKDLRR
DIKRHLCLSLVKRVPLFENMDERLLDAICERLKPCLYTDHTYIVREGDPVDEMLFIIRGR
LESVTTDGGRTGFFNRSLLKEGDFCGEELLTWALDPKSGANLPSSTRTVKALREVEAFAL
PADELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRHCKRKILERRRKEEE
EETELAAHDASGGNGGSHSLGATFLVSKFAANALRGVHRIRDQDQDRKLETGRELVNLPK
PPEPDFTADAD
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaatgtgtatctcagtctcaatttatgaggttggatgatttaggttcaagatca
tcatcagcctcatcctcgattcccctgaacaaacgtggatttgagggaataagtcagcca
catcatgcagctgcaatcccctttaaatctttcaaaaaaggaattgaaaaaggtactgaa
cgaattagatcaatcggccgctcactcggatttggagtatcccgtgcagtatttgctgaa
gatcttaaagtatcagaaaaaaaaatctttgaccctcaagataaattccttctgacatgg
aataaattctttgttgtttcctgtattctggctgtgtctatagacccattatttttttac
ctcccggttattgatcagtctaaatcatgccttggtatggacagaaagatggccattata
gttacaacacttaggaccattattgatacattttatcttatacacatggctcttcaattt
agaacagcatacattgcaccatcatcacgggtttttggacggggtgaacttgtgattaac
ccagcacaaatagctaaaagatatttgaggtggtattttatcattgatttcctctccgtg
cttcccctgccacagattgtcatttggagatatttgcaaagatctagaggttcagatgta
ttatctacaaaacaagcattattttttatggtgttactccagtatatcccaagatttgca
cgaattgtgcctttaacttcagaactcaaaaggactgctggtgttatcgctgaaaccgct
tgggctggtgctgcttattatttattgctgtacatgcttgctagtcatatagttggggcg
ttttggtatttattgtctgtagagcgtaatgatacatgttggcgaagagcttgtaaggaa
agcggtcacgatgctaatctattgtattgtggtaatgatcacatggtgggttatgatcgc
tggagcaatatcagtaggtcagttttaaccacggcttgcagccctgatggtgacaatcca
ccatttgattttgggattttccagcaggctttgtcatcgaacatcgtgtcatcgaaaaca
tttgtatcaaagtactgctactgcctgtggtggggactgcagaatttaagcacacttggg
caggggcttcaaaccagcacctatcctggggagtctttattttccatcacactcgccata
tctggactcattctctttgctcttttgatcggaaacatgcagacatacctccaatctctc
actatccgtcttgaagaaatgagagttaagaggcgtgactctgaacagtggatgcatcac
cggttacttccacaggatttgcgtgagcgtgtaagacgctacgatcagtataagtggtta
gaaactcgtggtgtggacgaagagagcttggtccagagtttgcccaaggatctcagaagg
gatataaaacgtcatctttgtctctctttggtcaaaagggttcccttgtttgagaacatg
gacgagagattgcttgatgccatatgtgaaaggctaaaaccttgtttatacactgatcat
acctacattgttcgagaaggagatcccgtggatgaaatgctcttcataatccgtggtcgt
cttgagagtgtaaccactgatggcggcagaactgggtttttcaatcgtagtttgctaaaa
gaaggtgatttttgtggtgaagagcttctaacatgggcacttgatcctaaatctggggct
aaccttccatcttcaactagaaccgtgaaagcactacgagaggtggaagcatttgcatta
ccagcagatgaactgaagtttgttgctggccagtttaggcggctgcacagtagacaggtg
caacacactttcagattttactcacagcagtggcgaacctgggcagcatgtttcattcag
gcagcctggcggagacattgcaagagaaaaattcttgagcgaaggcgtaaggaagaagag
gaagagacagaattggctgcacatgatgcatccggtggtaatggaggttctcatagcctt
ggtgctactttcttggtgtcaaaattcgcggctaatgctcttcgtggggtccaccggatc
agggaccaggaccaggaccggaaattggagactggcagggaactggtaaatttaccaaag
cctccagagcctgattttactgccgatgctgattag
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