Erigeron canadensis (horseweed): 122596324
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Entry
122596324 CDS
T07610
Name
(RefSeq) probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122596324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122596324
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122596324
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
122596324
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
122596324
NCBI-ProteinID:
XP_043624810
LinkDB
All DBs
Position
4:complement(34705690..34712472)
Genome browser
AA seq
1040 aa
AA seq
DB search
MTDQPIPFPAAVNAENLSTYNNNNNNDEEEEDEGDVCRICRNPGDSDNPLRYPCACSGSI
KFVHQDCLLQWLHHSKTRHCEVCKHRFSFSPVYAEHAPSKLPFQEFVVGMSTKACRVLQF
VMRLTFVLSVWLVIIPFITFWIWRFSFVRTFGEAQRLFMSHISTTVILTDCLHGFLLSAS
IVFIFLGATSLRDYVRHLREIAGPDDREDEGDRNGARVARRPPAQPNRNLFGDNAGGAQG
IGGAGQIIRRNAENVAARLEMQAARLEAHVEQMFDGLDDGEGAEDVPFDELVGMQGPLFH
LVENAFTVLASNMIFLGVMILVPFHLGRIILYHLAWILLSATDPVFSTVVPLTDQALSLA
NITLKNTLTAVSNLTFDHQPDDTVIGHVAGIIESNATGLINSSNNVTISLADNILPGETI
GASWVADVTTLAIGYMFIFLLIIFYFGTVALIRCTKGEPLIMGRFYGIASIAATIPSLFK
QFLTAMKHLTTMIKVAFLLVVELGVFPLMCGWWLDICTIRMFGKSIAQRVNFFSVSPLGS
SLIHWAVGIVYMLQISIFVSLLRGVLRTGVLYFLRDPADPNYNPFRDLIDDPVYKHSRRV
LLSVAVYGSLIVMLVFLPVKLAMRMAPSLFPLDISVSDPFTEIPANMLLFQICIPFAIEH
FKLRTTIKSLLHHWFAAVGWGLGLTDFLLPQPEDNDVQDNANRDPLQQDWLPPQLGDHEP
DVRFMDAIDMDKTVQAEADGDEQCDLERCRFVLRIVLLLLAAWMTLLIFNSMLLVVPVMI
GRALFSAASLLPITHGMKCNDLYAFIIGSYIISTTLAGARYCIDQIKTEKATVLLGHIWK
WCSIIVKSSLLLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWAFGLIFLKI
WTQLVMLDQMAPLVDDSWHLKFERVRENGFSGLQGVWVLREIVIPIIMKLLTALCFPYVL
ARGVFPIFGYPLVVNSAVYRFAWVGCLGFSLVCFCAKRFHAWVTDLHNSIRDDRYLIGRR
LHNFDEDVILRNRRRISIEG
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccaaccaattccttttccggccgccgtgaatgccgaaaacttatcaacatat
aataataataataacaatgacgaagaagaagaagatgaaggtgatgtatgtcggatctgt
agaaacccgggcgattcggataatccgttaaggtatccgtgtgcttgtagcggcagtatt
aagtttgttcatcaggattgccttttacagtggcttcatcatagcaaaactcgtcattgc
gaggtttgcaaacatcgattttcattctcccctgtgtatgccgagcatgccccttctaag
cttccttttcaggagttcgtagttgggatgtcaacgaaagcctgtcgcgtgttgcagttt
gttatgcgcctcacttttgtgctttctgtatggcttgtcataattccatttattactttc
tggatttggcgcttctcgtttgttaggacttttggtgaagctcagagactgtttatgagt
catatctccactacagttattcttaccgactgtcttcacgggtttttgctctctgcaagc
atcgtcttcatatttcttggggctacatcattgagagactatgttagacatttaagagaa
attgcgggcccagatgacagagaggacgaaggagatagaaatggtgctcgtgttgccaga
agaccacctgcacaacctaacagaaacctttttggtgacaatgctggcggagcacaagga
attggtggtgccggtcagataattagaagaaatgcagagaatgttgcagccagattggag
atgcaagcagctcgtcttgaagcgcatgttgaacaaatgtttgatggtttggatgatggg
gaaggcgcagaggatgttccatttgatgagctagttggcatgcaggggcctctttttcat
ttggtggaaaatgcattcactgttcttgctagcaacatgatatttcttggtgttatgatt
cttgtgccatttcaccttggacgaatcatactgtatcacctagcatggatattattatct
gctacggaccctgtcttttcaactgttgtaccactgacagaccaagcactttctctagcc
aatatcactttaaagaacactctgactgcagtgtcaaatctgacattcgatcaccagcca
gatgatactgtcattggccatgttgctgggataattgaatcaaatgctaccggacttatt
aactcatcaaataatgtcacaatttctcttgcggataatattctaccaggagaaaccatt
ggggcatcatgggtggctgatgtcacaactcttgctattggttatatgtttattttcttg
cttataattttctactttgggactgttgcattaattagatgcactaaaggagagccgttg
atcatgggaagattctatggtattgcttcaatagcagcgacaatcccttctcttttcaaa
cagttcttgacagcaatgaaacatttaacgactatgataaaagtggccttccttttggta
gttgagttaggggttttccctctgatgtgtggatggtggcttgacatttgtactataagg
atgtttggcaagtcgattgctcaacgagtcaacttcttttcagtgtctccgttgggaagc
tcattgattcattgggctgtagggattgtctacatgctacaaatatcaatatttgtcagc
cttcttagaggggttttgcgtactggagttctttattttttgcgggacccagctgatcct
aattacaacccctttcgtgatctaattgatgacccggtttataaacattctcgtagagtt
ctattgtcagtggctgtttatggcagcttaatagtaatgcttgtatttctacctgttaaa
cttgccatgcgaatggctccctccctcttccctcttgatatttcagtatccgacccattt
acagagattcctgctaacatgcttctctttcaaatatgcattccatttgctattgagcat
ttcaagttgcgaacaacaatcaagtcactgttacatcattggtttgctgctgttggttgg
ggactcggcctaactgattttttattgcctcaacctgaggataatgatgtacaagataat
gcaaaccgggacccgctgcagcaggattggttacctcctcaactaggggaccatgagcca
gacgttcgatttatggatgccatagatatggataaaacggtgcaggcagaagctgatggt
gatgagcagtgtgatttagaaagatgcagatttgtgctccgcatcgtgctgcttttgttg
gcggcttggatgacacttctaatcttcaattccatgttacttgtagtgcctgtcatgatc
ggacgggcattgtttagcgcagcttccctgctcccaatcacacatggcatgaaatgcaat
gatttatatgctttcattattggaagttatatcatctcaactacgctggctggtgcaagg
tattgtattgatcaaatcaaaacagagaaagcaacagttttactaggccatatttggaag
tggtgctccatcattgtgaagagttctttgttgttgtcaatatggatttttctcatccca
gtattgattggattgctgtttgaacttctagtaatcgtaccaatgcgggtccctgtggat
gaaagcccggtttttcttttgtatcaggattgggcttttgggcttattttcctcaagatc
tggactcaattggtaatgctggaccagatggcgccactggtggatgacagctggcatttg
aagtttgagagggtgagagaaaatggattctcggggctacaaggagtatgggtgttacga
gagatagttatacctattatcatgaagctgctaacggctctttgcttcccttatgtttta
gctagaggggtatttccaatatttgggtacccattagtggtcaactcagctgtctacagg
tttgcgtgggtggggtgccttgggtttagtttggtgtgcttttgtgccaagaggttccat
gcttgggtcactgaccttcacaactctataagagatgaccgctatctgattggcagaaga
cttcataattttgatgaggatgtaatattaaggaataggcgtcgtatttccatagaggga
tga
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