Erigeron canadensis (horseweed): 122596521
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Entry
122596521 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122596521
03041 Spliceosome [BR:
ecad03041
]
122596521
03036 Chromosome and associated proteins [BR:
ecad03036
]
122596521
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122596521
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122596521
mRNA cycle factors
Common to processing body (P body) and stress granule
122596521
Spliceosome [BR:
ecad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122596521
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122596521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122596521
NCBI-ProteinID:
XP_043625043
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All DBs
Position
4:38776170..38780183
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AA seq
611 aa
AA seq
DB search
MSSYSYFSDTYADVAAKPGRYPGRPNYYQPQLRRTTPTTPYIHPHGRGRPGPGPGSGMTR
TGYQYHDTNNLANRFNQLSVNEKETEFEKDDNTGINFDAYEDIPVDVTGSDVPDPVNKFT
DIDLGRVLNENIRERCKYVKPTPIQRHAIPVIMAGRDLMACAQTGSGKTAAFCFPIISGV
LKVPSAKIPVVYGRRERVAYPLALILSPTRELCCQIFEEAKKFCYQTGVRVAVAYGGAPR
YEQLRNFERGVDILVATPGRLTDMIEISRVSLNKIKYLALDEADRMLDMGFEPQIRKIVE
RLNMPPPGRRQTMLFSATFPAEIQRLASDFLSNYIFLSVGRVGSSTDLIVQKVVFVEDSE
KQEYLRNLLHDQKANGNLGKNALNLIFVETKRGADSLERWLGKMGFPAIAIHGDKVQFER
ERALRSFKLGVTPILVATDVASRGLDIPRVAHVINFDLPRDIDSYVHRIGRTGRAGKSGL
ATAFFNDKNSCIAKALSELMIEAHQEAPDWLNQYAESYAALNEQNYGSNKFGGRDFRNRN
DSSYGTADYDNASDGNDYYAYSQTMNGTASGGYDHYAPTPLNGDYGGTSNGFDSYASQPV
AADFGGGADWE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatattcttatttttcagacacttacgctgatgtcgctgctaaacccggtcgt
tatccgggtcgacccaactactaccaaccccaactccgtcgcaccacccccaccactccc
tacattcaccctcatggtcgtggtcgacccggacctggacccggatcaggtatgacccga
accggttaccagtatcatgataccaacaaccttgcaaacagatttaaccaactaagcgtt
aatgaaaaagaaactgaatttgaaaaggacgataacactgggattaattttgatgcatat
gaggacatacccgtggacgtaaccgggtcggatgtacccgacccggtaaacaagttcacg
gatattgatctgggtcgggttttgaatgagaatataagagagaggtgtaagtatgtgaag
ccaacgccgattcaaaggcatgctattccggtgattatggccggacgtgacttgatggcg
tgtgctcagactggaagtggtaaaacggcagcgttttgttttccgattatttctggggtg
ttgaaagtgccgtcggcgaagattccggtggtgtacggacggcgggagagggtggcgtat
cctcttgctcttattttgtctcccactagggaactttgttgtcagatatttgaagaagct
aaaaagttctgttaccaaactggtgtaagagttgctgttgcctatggaggtgcaccaaga
tatgaacagctacgaaactttgagaggggtgtggatatactagttgccactccaggaaga
ttgacggacatgattgaaatatcaagagtttcacttaataagatcaagtatttggctcta
gatgaagctgatcgtatgttggatatggggtttgaacctcaaatcagaaagattgtggag
cggttgaatatgcccccacctggtcggagacagactatgcttttcagtgcaacatttcct
gctgaaattcaaagacttgcatcggactttctttcgaactacatatttctatctgttgga
agagttggttcaagtactgatctaattgttcaaaaagtggtgttcgttgaggacagtgag
aagcaggagtatttaagaaatcttcttcatgatcagaaagctaatggaaatcttggaaag
aatgcgctgaatttaatttttgtggagacaaagagaggtgcagattcgttagaacgttgg
ctaggcaagatggggttccctgccatcgctattcatggtgacaaagtgcagtttgaacgg
gaaagagccttgagatcattcaaacttggcgtgactccaatactggtggctactgatgtt
gcttcgagagggctggatatccctagggttgctcacgtgatcaattttgatttgccacgt
gacattgatagctatgttcatagaattgggaggacaggccgtgctggtaaatctggatta
gcaacggcttttttcaatgataagaattcatgcattgctaaagcactttctgagcttatg
atagaagcacatcaggaagcaccagattggcttaatcagtatgccgagagttatgcagca
ttgaatgaacaaaattatggatctaataagtttggcggtcgagatttcaggaatagaaat
gatagctcttatggaactgctgattatgacaacgcttctgatggcaatgactattatgct
tattctcaaacaatgaatggcacggcttctggtggctatgaccactatgctcctacacct
ctgaatggagattatggtgggacttctaatggttttgactcttatgcttctcaacctgtg
gcagcagactttggtggtggtgctgactgggagtga
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