Erigeron canadensis (horseweed): 122596668
Help
Entry
122596668 CDS
T07610
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122596668
03036 Chromosome and associated proteins [BR:
ecad03036
]
122596668
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122596668
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
122596668
SLIK complex
122596668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
AAA_22
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
122596668
NCBI-ProteinID:
XP_043625226
LinkDB
All DBs
Position
1:complement(5060116..5080155)
Genome browser
AA seq
1710 aa
AA seq
DB search
MAYYRNYTNGTIPDGVLNDENQGGGTLGNDYLEGTSSMDKGKVEDDGEPYVMGSLNEPPP
EDDDDSLLNLPNSNVNSSNNNNNTRKATGRWGSTFWKDCQPINNRNGSESGHESKSSSEY
NVEEGSGNDFSEVDKANKGQNVDEMLSDDYYELDGDDQSDSMHHKFINNAAGYNSVAQPQ
VVANNFAYRKKPKSSYGADYVEDVDFEDDEEEDEDDPADADFDPASIPTSVGRGKKGLDE
DWEGEELDEDDNFDEDELDISDDDFYKKPSGTQRQKRGRSSSKFNREPKPSTSFSRRKRG
RISYDEEESSANDSDDDIEEDFKSTRRRSSHPRKEIGGRSFSTKGSGKNNEVRTSTRSVR
KVSYVESDESEDHGEDIKRKGLKEDMEEEDGDSIEKVLWHQPKGMAEEAARNNKSTEPVL
LNHLFDSETDWNNTEFYIKWKGQSHLHCQWKSFSELQKLSGFKKVVNYTKKVMEEIRHRR
TVSREEIEVIDVSKEMDLDLIKQNCQVERIIADRISRSLGVPEYLVKWQGLSYAEATWEK
IDDISFAQAAIDEYKAREAALEAVHGKLVDFQRRKSKASLRKLDEQPDWLKGGKLRDYQL
EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNSQQIHGPFLVVVPLSTLSNWA
KEFRKWLPDMNVIVYVGTRASREVCQQYEFFSDKKTDGTTKFDALLTTYEVLLKDKMVLS
TIKWNYLMVDEAHRLKNSEASLYMALKEFRTKNKLLITGTPLQNSVEELWALLHFLDSDK
FNSKDEFVQNYKNLSSFNEIELANLHMELRPHILRRVIKDVEKSLPPKIERVLRVEMSPL
QKQYYKWILERNFRDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVITGS
SKLERVILSSGKLVILDKLLDRLHETNHRVLIFSQMVKMLDILADYLSIKGFKFQRLDGS
TKAEVRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSR
AHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSGF
DKNELSAILRFGAEELFKEDRNDEENKKRLLSMDIDEILERAEKVEQKGTGEEAGHELLS
AFKVANFGSAEDDGSFWSRWIKPDAVAQADEALAPRAARNSKSYAEAVPPERSNKRKKKG
VESQDKAMKRRKPDYSSYQPPALEGASAQTRGWSYGSLPKRDATRFFRAVKKFGNDSQIS
LIAAEAGGSVEAAPVEAQVELFDALLDGCREAVKGGILDAKGPLLDFFGVPVKADELLSR
VEELQLLSKRINRYNDPISQFQALMYLKPATWSKGCGWNQKDDARLLLGIHYHGFGNWEK
IRLDETLGLLKKIAPVELQHHETFLPRAPQLKERASQLLEMELVAVGGKNSGNKGGRRGS
KKQKDHPPNMPTSRGRGKQWRQGSPELKVQNSKLRMTRGKKNEALVKEEGEMSDTEEVYE
QFKEVKWMEWCEDVLTEEKKTLERLHRLQTTSADLPKEKVLQRIRTYLQLLGRKIDQIVT
DHEEDLHKQERMTTRLWNYVSTFSNLSGGKLQQIYTKLKQEKEAAAGAGTSQMNGRGFRN
EAYDQSSALINKGLDTAKFEAWKRRRRADSDPNTHLQPQLPPRAFINGTMRLPDTSLGIL
GAAPSDSRPFTEDRPHRTRQPAFGHKQGFT
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggcttattatagaaactatacgaatggaacgattccggatggtgttttgaacgacgag
aaccagggcggtggaactttgggaaacgattatttggaaggaacgtcgagtatggataaa
gggaaggtggaagatgatggcgaaccgtacgttatgggatcgttaaatgagccaccacct
gaggatgatgatgatagcttattgaatctaccgaattctaatgtaaatagtagtaataat
aataataatacaaggaaagcaacaggaagatggggttcgacgttttggaaggactgtcag
cctattaataatcgaaatggctcggagtctggtcatgagtcaaaaagtagttctgagtat
aacgttgaagaggggtccggaaatgatttttcagaagttgataaggcaaataaaggtcaa
aatgtagatgagatgttgtctgatgattattacgagctggatggagatgatcaaagcgat
tcaatgcaccataagtttataaataatgcagctggttataattcagtagcacagccgcag
gttgttgccaataactttgcgtatagaaagaagccaaaatcttcatatggggctgactat
gtggaagatgttgattttgaagatgatgaggaagaagatgaagatgaccctgctgatgct
gattttgatccagcttcgatccctacaagtgttggaagagggaagaagggacttgatgaa
gattgggagggtgaagaattagacgaagatgataactttgatgaagatgaattagacatt
tcagatgatgatttttataagaaaccaagtggcacacagaggcagaagcgcggacgtagt
agttcaaagtttaatagagaacccaaaccatctacatctttcagtcgaaggaaaagagga
agaatatcgtatgatgaagaagagtcctcagcaaatgattcagatgatgatattgaagag
gactttaaaagtacaaggaggaggagtagtcatccacgcaaagaaattggtggtcgatct
ttttctacaaaaggctctgggaagaacaatgaagttcgaacttcaactagatcggtacgg
aaagtatcatatgttgaaagtgatgaaagcgaagaccatggtgaagatatcaagagaaag
ggcctcaaggaggacatggaagaggaagatggcgactccattgagaaggtgctctggcat
cagccaaagggcatggcagaagaagctgctcgaaataacaaatctacagagcctgtattg
ctgaaccatttatttgactcagagacagattggaacaatactgagttttatatcaaatgg
aaaggccaatcacatctgcattgtcaatggaaatcattttctgaactacaaaagttgagt
ggctttaagaaggtggtaaattataccaaaaaagttatggaggaaatcaggcacaggaga
acagtatctcgcgaggagattgaggtcattgacgtaagcaaggagatggatctagatctt
atcaagcagaactgtcaggttgagagaataattgccgacagaatcagcagaagtttggga
gtgccagagtacttggtcaagtggcaaggactctcgtatgctgaagcaacatgggagaag
attgatgacatttctttcgcgcaagcagcaattgatgaatacaaggctcgagaggctgct
cttgaagctgtccatgggaaattggtagatttccagcgaagaaagagtaaagcaagtttg
agaaaacttgatgaacagcctgattggctaaaaggcgggaaactgagagactatcaactt
gaaggtttgaattttcttgtcaatagttggagaaatgatacgaatgtgatattagctgat
gagatgggccttggcaaaacagttcagtcagtttcaatgcttggatttcttcagaactca
caacaaattcatggaccatttcttgttgttgttcctttatcgactttgtcaaattgggct
aaagagttcagaaagtggcttcctgatatgaacgtcattgtatatgttgggactcgtgct
agtcgtgaggtctgtcagcaatacgaatttttctctgataagaagacggatggcaccaca
aagtttgatgcgctattgactacatatgaagtattactgaaggataagatggtgctatca
acaattaagtggaactatcttatggttgatgaagcacatagattgaaaaatagtgaagcg
tcattatatatggcactcaaggaattcaggacaaaaaacaagctccttattactggcact
cctttgcaaaacagtgttgaagaactatgggccttgcttcactttctcgactcagataaa
ttcaacagcaaggatgaatttgtgcagaattacaagaatcttagttcgtttaatgaaatt
gagcttgcaaatctccatatggagttgcggccccacattttgcgaagagttataaaagat
gtggagaagtccctgcctccaaagattgagcgtgttctccgggttgaaatgtcacctcta
cagaagcagtattataagtggattttggaacgcaactttcgtgacttaaataaaggtgtt
cgtgggaatcaggtttctcttttgaacattgtggttgagttgaagaaatgttgtaatcac
ccattcttgtttgaaagtgctgatcatggttatggtggggactccgtaattactggtagc
agtaaattggaacgtgtaattctcagcagtgggaagctagttatcttggacaagcttcta
gataggttgcacgaaacaaatcaccgggttttaatattttcacagatggttaagatgctg
gatattctagcagattatttgtctattaagggattcaagtttcaaagactcgatggaagc
acaaaggctgaggtacgccaccaagctatggagcattttaatgcccctggcagtgatgat
ttctgcttccttctttctactcgtgctggtggtttaggtatcaaccttgcgacggccgat
acagtcatcatctttgactctgactggaatcctcaaaacgatctgcaggcaatgagccga
gctcatagaatcggacagcaagatgttgttaatatctataggtttgtaacaagcaaaagt
gttgaagaagacattttggaacgtgcaaaaaagaagatggtacttgatcatttggttatt
cagaaactaaatgctgagggaagattggagaagaaagaagcaaaaaaagggagtggattt
gacaagaatgagttatctgctattttaagatttggagcagaggagctgtttaaagaagat
agaaatgacgaagaaaacaaaaagcgccttctaagcatggatattgatgaaattcttgaa
agagctgagaaagttgaacagaaaggaactggagaagaagcagggcatgaattgctgagt
gcatttaaggttgcaaatttcggttctgcagaagatgatggaagtttttggagtcgctgg
ataaaacctgatgccgttgcacaagctgatgaagctttagctcctcgagctgcacggaat
agcaagagttatgcagaggctgtcccacctgaaagaagtaataagaggaaaaagaagggt
gttgaatcacaagacaaagcgatgaagcgccggaagcctgattattctagctatcaacca
ccagcacttgagggagcttctgcacaaacaagagggtggtcatatggcagcttgccgaag
agagatgctacacgattttttcgtgcggttaagaagtttggaaatgatagccaaattagc
ttaatagcagccgaggctggtggatctgttgaagctgctccggtagaggcacaggttgag
ctttttgatgcgttgttggatggttgcagagaagcagttaagggagggattctggacgcg
aagggtcctttgttggatttttttggtgtccctgtaaaggctgatgaattactaagccgt
gtcgaagaacttcaactcctttcaaagcgcattaaccgctacaatgatccaatctcacag
tttcaggctttgatgtacctgaaacctgcaacttggtccaaaggttgtgggtggaaccag
aaggatgatgcaaggctgctactgggaatccattatcatggatttgggaattgggaaaag
ataaggctggacgaaacgcttggccttttgaagaagattgctccggtggaacttcagcat
catgaaacctttctaccacgagctccccaattgaaagaacgagcttctcaacttcttgaa
atggaacttgtggctgttggtggtaagaattctgggaataaagggggtcgtaggggttct
aaaaagcagaaggatcatcctcccaacatgccaacttcacgtggcagaggcaaacaatgg
agacaaggatccccagaattaaaagtccaaaatagtaaactgaggatgacccgtggcaag
aaaaatgaggctttggttaaagaggaaggtgaaatgtcagacactgaagaagtgtatgaa
cagttcaaggaagtaaaatggatggaatggtgtgaagatgtcctaacagaagagaaaaag
accctcgagcgtcttcacagattacaaaccaccagtgcagatcttcctaaagaaaaggtt
cttcagagaattagaacttatttacagcttcttgggcgaaagattgatcaaattgttacc
gaccacgaagaggatcttcataagcaagaaaggatgacaacacgactatggaattatgtc
tcaaccttttcaaatttatcgggtggcaaacttcaacagatctataccaaactcaaacaa
gagaaagaggctgcagcaggagcgggtacttcccaaatgaatggaagaggttttagaaat
gaagcatatgatcaatcatctgcattgataaataaaggccttgatacagcaaaatttgaa
gcatggaaaaggagaagaagagccgattctgacccgaatactcatttacaaccacaattg
ccgccacgggctttcattaatggtaccatgcgcctacccgatacaagtttgggaattctt
ggggctgcaccatctgacagtagaccctttactgaagataggcctcataggacacgccag
cctgcttttggtcataaacaaggttttacatga
DBGET
integrated database retrieval system
