Erigeron canadensis (horseweed): 122596669
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Entry
122596669 CDS
T07610
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122596669
09124 Replication and repair
03420 Nucleotide excision repair
122596669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122596669
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122596669
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122596669
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122596669
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122596669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
122596669
NCBI-ProteinID:
XP_043625222
LinkDB
All DBs
Position
4:844231..852321
Genome browser
AA seq
1185 aa
AA seq
DB search
MDIGGEKEECEHQNSSDEITQEDAWAVISCYFEEKGLVHQQLDSFNDFIQCSMQDIVDQS
AVVDIRSESFPHHPETICKIRFGQTYLSKPIMTEPDGGTTTLFPNAARLRNLTYSAPLYV
DVTKTTIKKGHDGEEVTETQDFSQVFIGKIPIMLRSSYCMLYQNSEKDLAELGECPYDQG
GYFIINGSEKVLIAQETMATNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLA
RTSAKGGSSGQYIRATLPYIRTEIPIVIVFRALGFVADKDILEHICYDFADTQMMELLRP
SLEEAFVIQNQQVALDYIGKRGVTVGVTKEKRIKYARDILQKEMLPHVGVEESCETTKAY
YFGYIIHHLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFKKLTRDAREYAQKCL
DKGKDVDLYLAIKAKTITSGLKYALATGNWGQANTAGTRTGVSQVLNRLTYVSTLSHLRR
LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNHALMTHITVGSATYPIIEL
LEDYGKEDFEEISPAVIPQATKIFVNGRWVGIHRDPDMLVRTLRSLRRRVDVNTEVGVVR
DIRLQELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQKLQQRETPEDGGWHDLVSNGFIEY
IDTEEEETTMIAMTINDLVSARINPDESYSDTYTHCEIHPSLILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGIYVTNFQLRMDTLAYVLYYPQKPLVTTRAMEHSHFRQLPAGINAIV
AISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKTVTLGKERFGKPDRADTMGM
RPDAHYSELDHDGLASPGTQVGGEDVIIGKTTSLVQDDAQGMASRYTDRDHSTSLRHSET
GTVDQVMLTTNANGLKFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI
TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQM
RGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG
GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKSSFECRSCRN
KTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDAQQAKDSKKKGA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggatataggaggagaaaaagaagaatgtgaacatcagaattcatcagatgagataaca
caagaagatgcatgggcagtaatcagttgttactttgaagaaaaaggacttgttcatcaa
caactggattctttcaacgacttcattcagtgtagtatgcaagatattgttgatcaatcc
gccgttgtcgatatccgatcagaatcctttcctcatcaccccgagaccatctgtaagatc
aggtttggtcagacatatctgagtaaaccgataatgacagagccagatggtggaaccacc
acattgtttccaaatgcagcaaggctaagaaatttaacgtactctgcaccattgtacgtt
gatgtaacaaaaacgactataaagaaaggacatgatggcgaagaagtcaccgaaactcaa
gattttagtcaagttttcattggaaagattcctataatgctgcgttcgagctactgtatg
ctataccagaattcagaaaaggacctggctgagctcggagagtgcccatatgatcaagga
ggatattttataatcaatgggagtgaaaaggttctaattgctcaagaaactatggccacc
aatcatgtctatgtgtttaaaaagagacaacccaataaatatgcttatgtggctgaagtt
cgttcaatggcagaatctcagaataggccaccgagtaccatgtttgtacggatgcttgct
cgaactagtgccaaagggggttcttctggtcaatatattcgtgctacacttccatatatc
cgaactgagattcctatcgttattgtgtttcgagcactgggattcgttgctgataaagat
atattagaacacatttgctatgattttgctgatactcagatgatggagttgctgcgccct
tcattagaagaagcttttgtgatacaaaatcaacaagtggcgctcgattacattggaaaa
agaggtgtcactgttggtgtcacaaaagagaagagaataaagtacgcacgtgatattctt
caaaaagaaatgcttcctcatgtaggggttgaagagagttgtgaaactacgaaagcatac
tatttcggatacatcatccaccatctattgttatgtgctcttggccggagggccgaggat
gacagagatcattatggaaataagaggcttgatcttgccggtcctctgcttggaggccta
tttagaatgctctttaaaaagttaacaagagatgcaagagaatatgcacagaagtgttta
gacaaggggaaggatgttgatttgtaccttgctattaaagcaaaaacgataaccagtggg
cttaaatatgcactagctactgggaattgggggcaggcaaatactgctggaacaaggact
ggtgtttcacaggtgttgaatcgtttgacttatgtatctacactgtcacatttacgtaga
ctcaactctcctattgggcgtgaaggaaagttggcaaaaccgagacagctgcataactcg
caatggggaatgatgtgtcctgcagaaactcccgaaggacaggcatgtgggctagtgaaa
aatcatgcattgatgacacacataacagttggatcagccacatatccaattattgaactt
ttggaagactacggtaaagaagattttgaggaaatttctcctgctgttatcccacaagct
acaaaaatctttgtcaacggtcgttgggtaggaatccaccgtgatcccgacatgttagtt
agaactctgaggagtttaagaaggcgggttgatgtgaacactgaagttggagttgtccgg
gatattcgtttgcaagaacttcgaatttataccgattatggccgttgtagtcgtcccctg
ttcattgttgagaagcaaagactattaattaaaaagaaagacatccaaaagttgcaacaa
agggaaaccccagaagatggtggttggcatgatcttgtatcaaatggtttcatcgagtac
attgatactgaagaagaagagactactatgattgccatgaccattaatgatcttgtaagc
gccaggataaatccagacgagtcttattctgacacttatacccattgtgaaatccatcca
tcattgatcttgggtgtttgtgcctccattataccatttcctgaccacaatcagtctcca
cgtaatacctatcagtcagccatgggtaagcaagcgatggggatctatgtcaccaacttc
cagctccgtatggatacgttggcatacgttctctactatccgcagaaacctcttgtaaca
actcgagcgatggagcactctcacttccgacagctcccagctggcattaacgcaattgtg
gcaatttcgtgttattctggatataatcaagaagattcagttatcatgaaccagtcgtca
atcgaccgtggtttcttcagatcactttttttccgttcatatagggatgaagaaaagaag
acggtgacacttgggaaagaacgttttggtaaacctgatagagctgacaccatgggtatg
aggcctgatgctcactatagtgagttggatcatgatggtctagcttctcctggaacacaa
gttggaggtgaggatgtgataatcgggaaaacaacttcgcttgtgcaggatgatgctcag
gggatggcctctcgttacactgatcgtgatcacagcacaagcttacgtcacagtgaaact
ggaactgttgatcaggtaatgctgacaacaaatgctaatgggttaaagtttgtgaaagtg
agagtgagatctgtaaggataccccaaattggagataagttcagtagtagacatgggcaa
aagggaactgtgggtatgacttacacacaagaagacatgccatggactgtggaaggcatc
acccctgatattattgtcaatcctcatgctatcccttctcgtatgacaattggtcaactt
attgagtgtatcatggggaaggttgcagcacatatgggcaaagaaggagatgctactccg
ttcacagacgttactgtggataatatcagtagggcacttcataagtgtggttaccagatg
cgtgggtttgagactatgtacaatggccatacagggcgaaggcttccggctatgatattc
cttgggccgacttactaccaacgattaaagcatatggtggacgataagattcattcacgt
ggacgtggtcctgttcagatcctgactcggcagcctgctgagggacggtcacgtgatggc
gggcttcggtttggagagatggaacgagactgtatgattgctcatggtgctgctcatttt
cttaaagaaagactctttgaccagagtgatgcgtatagggttcatgtctgtgagcattgt
ggtctgattgccattgctaatctcaaaaagagttcttttgagtgcagaagctgcagaaac
aaaactgatatcgttcaggtgcatattccatacgcatgtaaactgctgtttcaagagctc
atgtccatggcgattgcacctagaatgcttacaaaagatgcccaacaagctaaagacagc
aagaagaaaggcgcttga
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integrated database retrieval system
