Erigeron canadensis (horseweed): 122596722
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Entry
122596722 CDS
T07610
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122596722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122596722
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122596722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
PRP4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SCAP
WD40_RFWD3
WD_LRWD1
eIF2A
Beta-prop_Vps41
Ge1_WD40
WD40_like
Motif
Other DBs
NCBI-GeneID:
122596722
NCBI-ProteinID:
XP_043625282
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Position
4:complement(23629992..23634709)
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AA seq
523 aa
AA seq
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MDIDDTENPNPNTTDTVPPPQTTALLPTPPPIAPIPRPPLRPQNDDEKESENDDSSPEYE
ISEESKQFREKKEKAKQEFLMKQRAAALSVPTNDKSVRSRLRRLSEPITLFGEKEMERRE
RLRMIMAKLDSEGQLETLMRVFEEEGMEDGGGGEEDEGEAVQYPFYTEGSTELLKARYEI
AKSSVLKAAERLGRARRKRDDPDEDFDGEVNWALENAKSFVLDCSEIGDDRPLSGCSFSC
DSMFLATCSLTGVAKVWSMPGVKVVSSLKGHTERATDVTFSPTNNHIATASADRTARLWN
TEGSLLNTYKGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDTETGEELLLQEGHSRSVYG
LAFHPDGSLAASCGLDALARVWDLRSGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT
CRIWDLRKKRSLYTIPAHANLISQIKFEPQEGYFLVTASYDMTAKVWSSRDFKPVKVLSG
HEAKVTSVDVAGDGTSIATVSHDRTIKLWSSKIAEKEKAMDID
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgacgacactgaaaacccaaaccctaacaccactgacacagtaccgccgccg
caaaccaccgccctcctcccaaccccaccaccaatcgccccaattccacggccaccactc
cgtcctcaaaacgacgatgaaaaagaatccgaaaacgacgattcatcaccagaatacgaa
atctcggaagaaagcaaacaattccgagaaaaaaaagaaaaagccaaacaagaattcctg
atgaaacaacgtgcggcagccttatcggttccgacaaacgacaaatctgtccggtcgagg
cttcgcagactatccgaaccaatcacattgtttggagaaaaagaaatggagaggagagaa
aggttacgaatgataatggcgaaactcgattccgaaggacagttggaaactttaatgagg
gtatttgaagaagaaggtatggaagatggaggtggtggtgaggaggacgaaggagaagct
gtacagtatccgttttatacggaagggagtacggagttgttgaaagcgagatatgagatt
gcgaagagctcggttttgaaagccgcagagaggttgggacgggcgaggaggaaaagggat
gacccagatgaggattttgatggggaggtgaattgggctttggaaaatgcgaaaagcttt
gtgttggattgtagtgagattggagatgatcggccgctttctggatgctcgttttcgtgt
gatagcatgtttcttgctacttgttctttgactggagttgctaaggtatggagcatgccg
ggagtaaaggttgtgtcctcattgaaggggcatacagaacgagctacggatgttaccttt
tctccaactaacaaccacatagctactgcttctgctgaccgcactgcaaggttatggaac
accgaaggaagtctgctaaatacatacaagggtcatttggatcgtctagctcgtgttgct
ttccatccatcgggcaagtatctgggtacaaccagttttgacaagacatggagattatgg
gacacagagactggtgaggagttgcttctccaagaaggtcacagtcgaagcgtttatggc
ttggcttttcaccctgatggctctttagctgcgtcttgtgggcttgatgcacttgctcgt
gtatgggacttacggtcagggagaagcattcttgccttggaaggtcacgtgaagccggtt
cttggtatcagtttctcacccaatggctatcatttagcaacaggaggtgaagataatact
tgtagaatctgggatttgaggaagaagagatccttgtacacaattcctgctcatgctaat
cttatttctcaaattaagtttgagcctcaagagggatacttcttggtaactgcttcatat
gatatgacagctaaggtatggtcatccagagattttaagccagtcaaggtcctttctggt
cacgaagcgaaggttacatctgttgatgtggccggagatggaacaagtatcgctactgtt
tctcatgacaggacaatcaagttatggtcgagcaaaatcgctgaaaaggagaaggcaatg
gacattgattga
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