Erigeron canadensis (horseweed): 122596773
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Entry
122596773 CDS
T07610
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122596773
09123 Folding, sorting and degradation
03018 RNA degradation
122596773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122596773
03041 Spliceosome [BR:
ecad03041
]
122596773
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122596773
mRNA degradation factors
5'-3' decay
Lsm complex
122596773
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122596773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
122596773
NCBI-ProteinID:
XP_043625336
LinkDB
All DBs
Position
4:23343421..23347139
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVSGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRSLGLIVCRGTAVMLVSPTDGTEEIANPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaggaaggaaacagttttggatttagccaaatttgttgacaagggtgtccaa
gtcaagctcactgggggaagacaagtgtcagggacacttaaaggatatgatcagttgctg
aaccttgttttagatgaagctgttgagtttcttagagatgccgatgatccactaaagacc
actgatcaaactcgtagtcttggcttaatagtttgtaggggtactgctgttatgcttgtt
tcacccactgatggtacagaagagattgctaatccatttgtacagccagatggagcctaa
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