Erigeron canadensis (horseweed): 122597214
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Entry
122597214 CDS
T07610
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122597214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122597214
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122597214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122597214
NCBI-ProteinID:
XP_043625771
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Position
4:complement(24497688..24505436)
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AA seq
1126 aa
AA seq
DB search
MAYKVVTIVIEEGGVRDCLSRPSSRNRKRNRERGDSQSSSRTKQDFPKECLEENKDSKAE
SVVFYGSTKRKVDEVKKVDGLLLDELEEEKDPINGSEGFCRTIKREVDELVKKVNESFLE
DELEDENEINDIDVINISSESSNDSDSDYVYVSEEEQEEADKDLPKSHTHYHASTSNTKA
RPYQSIEDDPSSSSDNESDDDSLPNNTLKQPAEKHSPMDISPIYILIDTDESERAGSDSE
ESHVSLKENDGLKETDNIECTDISTKSKGYSSANSFKTRMHANIICLSDDSDSENTIVLE
EQEDADEALQKCFKYGKHKIRSGLAERKKKNRSSTKGVNYYYDDDDEDPLTSIGRERNKN
QSTTKNQLPKETKREKNSNCSAQKANMKKMYEKPMSKSSGSIDDILDSVIKNKAGLGENG
GDCLPLKFRFEDSEDESMSQKTDEFNAEGLFEEMDFVLDCEEIGSYRTPMVNNQEKADHN
DTVNLCERGEHSDIYLEEQTGLRCRLCGAVLLESRYVISKLANYAPDRSQRSYHYDEQQW
SSFGNPYLEASDCPDIMCNETQGTVWELIPTSISSQLYPHQQEGFKFLWENLAGTIELSG
LEKLGPRGGGGGGGGCIISHAPGTGKTLLTIVFIETFLKRFPRCCPVIVAPASMLLTWEA
EFEKWQVGFSFINLNCSDLRKGRTNGSSRHNKDFIRALKISSWSNGGSILGISYNLYTKL
AGISNTKNKSLEKMRNVLLDMPGLVILDEGHTPRNQESNIWNTLLKLKTKNRVILSGTPF
QNNFRELFNTLRLVRPETATNIMNEKIFADMIQQNTKRSRSRSTYEDVEKLKKIISPFVH
VHKGHILESKLPGLKQAVILLDPPAIQKSFIENLGNMTTTFEYEYKVALVSVHPSLILHC
SLSEKEEKSVNQQELEKMRLQPDCGVKTRFVLELIRLSVSLHEKVLIFSQYVRPFKLLQD
QVARAFGWNVGTEIMVIGGKTNQMHRQKIINDFNDPNGKVKVLLASTRCCSEGIHLYGAS
RVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLMAAGTTEEEKYDRQVEKARLAEMVF
SSGSMARAEVSKKVMDDHILQHMVDHHELKHMFKKIKYPENETRVS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggcatataaagtcgtgactatcgtgattgaagaaggaggcgtacgtgactgcttaagc
agaccaagttcaagaaaccgaaagcgaaacagagaaagaggggattctcaatctagcagt
aggactaaacaagattttccaaaagaatgtttggaagaaaacaaggattctaaagcagaa
tctgtagtgttttatggatcaactaaaagaaaagttgatgaagttaagaaagttgatgga
ttattgttggatgagcttgaagaggaaaaagatcctataaatggatctgaagggttttgt
agaacaattaaaagagaagttgatgaattagttaagaaagttaatgaatcattcttagaa
gatgagcttgaagatgaaaatgaaatcaatgatattgatgtcataaatatttctagtgag
tcatctaatgactcagattcagattatgtgtatgtgtctgaagaagaacaagaagaggct
gacaaggatcttccaaaatcacacacacattatcacgcgagtacaagtaatacgaaagca
cgcccgtatcagtctattgaagatgatccatcaagttcaagtgataatgagagcgatgat
gattctctaccaaacaacactttgaagcagccagcagagaagcactctccaatggatata
agcccaatatatatcttaattgatactgatgagtctgaaagggcaggaagtgactctgaa
gaatctcatgtttcattgaaagagaatgatggcttaaaggaaactgataatattgaatgc
acggatatctcaacgaaaagtaaaggttatagttcagcaaactcctttaaaacccgcatg
catgcaaacattatttgcttatcagatgactcggattcagagaataccattgttctagaa
gaacaagaagatgctgatgaagctcttcaaaaatgcttcaaatatggcaaacataaaata
cggtctggattagctgagagaaagaagaagaatcgttcaagcacaaaaggtgttaattat
tactatgatgatgatgatgaagacccactcacttctattggacgtgagagaaataagaac
cagtccacaactaagaaccaacttccaaaggaaaccaagagggagaaaaattcgaattgt
tcagcgcaaaaagcaaacatgaagaaaatgtatgaaaaaccaatgagtaaatcaagtggc
tctatagatgatattttggattcagttattaaaaataaagctggtcttggagaaaatggc
ggcgattgccttcctttaaaattcagatttgaagatagtgaggatgagtctatgagccaa
aagactgatgagttcaatgcagaaggcctatttgaagagatggattttgtgctcgactgt
gaagaaattggttcctatagaactcccatggtaaataatcaagagaaagctgaccacaat
gacactgttaacctttgtgaaagaggggagcacagtgacatttaccttgaagagcaaacg
ggcttgaggtgtcgtttatgtggtgctgtccttcttgagagcagatacgtgatatcgaag
ctagcaaactatgcaccagatagatcacaaagaagttatcattatgatgaacaacagtgg
tctagttttggaaatccatatcttgaagcttcagactgtcctgacatcatgtgtaatgaa
acccaaggaacagtgtgggaacttattcctactagtatcagctctcagttatatccccac
caacaagaagggttcaaatttttgtgggaaaatttagcaggaactatagagctttcagga
ctagaaaaacttggtccacgtggaggtggtggtggtggcggtggctgcatcatctcacat
gctccaggcactgggaaaaccctcttaacaatcgtatttattgagacattccttaaaaga
tttcccagatgttgtccggtaatagttgctccagcaagcatgctactaacatgggaagct
gaatttgagaaatggcaagttggcttttcctttattaacctcaactgttctgacctgaga
aaaggcaggaccaatggtagttcccgacataataaagattttatccgtgctctgaagata
agttcttggagtaatggaggtagcattcttggtataagctacaatttgtatacaaaacta
gctgggatttcgaacaccaagaacaaaagtcttgaaaaaatgaggaacgttttgttggat
atgccgggcttagtaattcttgatgaaggacacacacctcgtaatcaggaaagcaacatt
tggaatacacttttgaagcttaaaaccaaaaatcgtgtgattttgtcaggaacccctttt
caaaacaactttcgggagttattcaataccctacgtttagtaaggccagaaacagcaact
aatattatgaatgaaaagatttttgcagatatgattcaacaaaacacgaagagatctaga
agtagatcaacttatgaagatgtggagaagctcaaaaagataatttcaccgtttgttcat
gtccataaaggacatattcttgaaagcaagcttccaggtttaaaacaagctgtcattctt
ctagatccacctgcaattcaaaagagttttattgaaaatttgggaaatatgacaactact
tttgagtatgaatacaaagtagcgttggtctctgtacacccttctttgatcctgcattgt
tcattatccgagaaagaagagaagtcagtgaaccaacaagaacttgaaaagatgagactt
caacccgattgtggtgtgaagaccagatttgttctggagcttattcgcctaagtgtatcc
ttacatgaaaaggttttgatctttagtcaatatgtcaggccgtttaagttgttacaggac
caagttgctcgggcttttggttggaatgttgggacggagattatggtcattggaggaaag
acaaatcagatgcacaggcaaaagattattaatgatttcaatgatccaaacggtaaagtg
aaagtgttgttggcatctacaagatgttgttctgaaggcattcatctttatggtgcttct
cgtgttgttcttttggatgtagtttggaacccctctgtcgaaagacaagcaatcagcaga
gcatatcgacttggccaaaagaaggtggtgtacacataccatttgatggcggctggtact
actgaagaggagaagtatgatcggcaggttgaaaaagcacgcttggctgagatggtcttt
tcctcgggttccatggctagggcggaagtgagtaaaaaggtgatggatgatcacatcttg
cagcatatggtagaccatcatgaattaaaacatatgttcaagaagatcaagtaccccgaa
aatgaaacaagagtttcatag
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