Erigeron canadensis (horseweed): 122597215
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Entry
122597215 CDS
T07610
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122597215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122597215
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122597215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
122597215
NCBI-ProteinID:
XP_043625772
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Position
4:complement(24510774..24514239)
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AA seq
946 aa
AA seq
DB search
MIRILVTGCINPPEGSYLQEADEIHSKSKANAFQFPEDEDEPPVKRKQSNMEKSKAKVRS
GLTDRKENEPLVQKTRMKKTGTRIQVVHLSVDSDSDDKKEVVTEADGRQSNSKVDTFQFP
EDDEDGQFSACESGDEDEPPVKWKQSSMEKTKEKVRPGSIDRKVHDPLVHKSRMKKMDKG
PTNELSNIGHQKRKKAINIDRDTMGELSGLDRYTRVDKSSSDEHEKSNKGSSKDDGGSLD
AILDSNIANEGVQGKKYVSSYTYRFDVSENESKSQTTDEFGAEGLFEEMKFELEFDEMGS
YRDSTVEKHEKDKNISPIDLCRRGEHGDFYFEEQTGYRCCACGAVILETKDTISKHATYA
PDKSKRSYRFDEYRVSSSENLYPEGADSNSPDIMCHETRGTVWELIPTSIRSHLYPHQRQ
AFKFLWENLVGTIEFSELQKLGSRGGGGCGGCIISHAPGTGKTLLAIVFVDTFLKIFSRC
CPVIVAPASTLLTWEAESKKWPVGFSFINISSSRHNKDSIRAIKIRSWSNGGSVLGISYN
LYTKLAGILNTKNKRLEKMRNILLDMPGLVVLDEGHTPRNQESNIWNTLLKLKTKNRVIL
SGTPFQNNFRELFNTLRLVRPEIVKGKIFSDMIRQNMKRSGSRSTCEDVEKISKIISPFV
HVHKGHILESKLPGLKEIVILLDPPAIQKSLIENLENMTTSFEYEHKVALVSVHPSLILH
WSLSEKEEKLVNKQELEKMRRHPHCGVKTRFVMELIRLSVLLNEKVLIFSQYLKPLELLQ
DQVARAFHWNVGTEIMVIDGRITQVHRQAIFNDFNDPNGKGKVLLASTRCCSEGIHLYGA
SRVVLLDVVWNPSVESQAISRAYRLGQKKVVYTYHLIAGTTEEDKYNQQVEKARVAEMVF
SSGSMASAEVSRKVTLDDKILQHMLDHQELKHMFKKIRYPENQPRV
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgatcagaattcttgttacgggttgtataaatccaccagaaggcagttatttgcaagaa
gcagatgaaattcatagtaaaagtaaggccaacgcatttcagtttcccgaagatgaagat
gagccaccggtgaaaaggaagcaatctaatatggaaaaatcaaaggcgaaagttcggtct
ggattaactgacagaaaggagaatgagcctttagtacagaaaacaagaatgaagaaaacc
gggacacgtatacaagttgttcacctatcagttgattcagattcagacgacaaaaaagaa
gttgtcacagaagcggatgggagacaaagtaatagtaaggtcgacacatttcagtttcct
gaagatgatgaagatggtcagtttagtgcttgtgaaagtggggatgaagacgagccaccg
gtgaaatggaagcaatcttctatggaaaaaacaaaggagaaagtccggcctggatcaatt
gacagaaaggtgcatgatcctttagtacacaaatcaagaatgaagaaaatggataaagga
ccaacgaatgaactgagtaatattggccatcagaagagaaagaaggctataaacatagat
cgtgacacgatgggtgaattgagtggcttagatcgttacacaagagttgataaatcaagt
tcggatgaacatgaaaaatctaataagggtagctcaaaagatgatggtgggtctcttgat
gcaattttggattcaaatattgcaaatgaaggtgttcaaggcaaaaagtatgttagttca
tatacgtacagatttgatgtcagcgaaaacgagtctaagagtcaaacgactgatgagttc
ggtgcagaaggcctatttgaagagatgaaatttgaacttgaatttgacgaaatgggttcc
tacagagattccacggttgagaaacacgagaaagataagaacatttcccctattgatctt
tgccgacgaggggagcatggggacttttactttgaggagcaaacgggctacaggtgttgt
gcatgcggagctgttattcttgagaccaaagatacgatctcgaagcatgcaacttatgca
ccggataagtcaaaaagaagttatcgatttgatgaatatcgggtgtctagttctgaaaat
ctatatcctgaaggtgcagactctaactctcctgacatcatgtgtcacgaaaccagagga
acagtttgggaacttattcctactagtatccgctctcacttgtatccccaccaacgacaa
gcgttcaagtttttgtgggaaaatttggtaggaacaatagagttttcagaactacaaaaa
cttggttcacgtggagggggtggctgcggtggctgcatcatctctcatgctccgggcact
gggaaaaccctcttagcaatcgtatttgttgacacattccttaaaatattttccagatgt
tgtccggtaatagttgctccagcaagcacgcttctaacatgggaagctgagtctaagaaa
tggccagttggtttttcgtttattaacataagcagttcccgccacaataaagattctatc
cgtgctataaagataagatcttggagtaatggtggaagcgttcttggaataagctacaat
ttgtatacaaaactagctgggattttgaacaccaagaacaaacgtcttgaaaaaatgagg
aacattttgctggatatgccgggattagtagttcttgatgaaggacacacacctcgtaat
caggaaagcaacatttggaatacacttttgaagctaaaaacaaaaaaccgtgtgatttta
tcaggaacgccttttcaaaacaacttcagggagttgttcaataccctacgtttagtaagg
ccagaaatcgtgaagggaaagatcttttcagatatgattcgacagaacatgaagagatct
ggaagtagatccacttgtgaagatgtcgagaagatcagtaagataatttcaccgtttgtt
catgtccataaaggacatattcttgagagcaagcttccaggtttgaaagaaattgtcatt
cttctagacccgcctgcaattcagaagagtttgattgaaaatttggaaaatatgacaaca
tctttcgagtatgaacacaaagttgcattggtctctgttcatccttctttgatcctacat
tggtcattatctgaaaaagaagagaagttggtgaacaaacaagaacttgaaaagatgaga
cgtcacccccattgtggtgtgaagaccagatttgttatggagctcattcgccttagtgta
ttgttaaatgagaaggttcttatatttagtcaatatctcaagccgttggagttgttacag
gaccaagttgctcgggcttttcattggaatgtcgggacagagattatggtcattgatgga
aggataactcaggtgcataggcaagcaatttttaacgattttaatgatccaaacggtaaa
gggaaagtgttgttggcgtctacaagatgttgttctgaaggcattcatctttatggtgct
tctcgtgttgttcttttggatgtcgtttggaatccctctgttgaaagccaagctattagt
agagcatatcgacttggccaaaagaaagtggtgtatacttaccatttaattgctggtact
actgaggaggacaagtataatcaacaggtggagaaagctcgggtagctgagatggtcttt
tcttcgggttcaatggctagtgcggaagttagtagaaaggtgaccttagatgataagatc
ttgcaacacatgttggaccatcaagaactgaaacacatgttcaagaagatcaggtaccct
gaaaatcaaccaagagtttga
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