Erigeron canadensis (horseweed): 122597419
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Entry
122597419 CDS
T07610
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122597419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122597419
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122597419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122597419
NCBI-ProteinID:
XP_043625951
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Position
4:complement(32307130..32311020)
Genome browser
AA seq
1110 aa
AA seq
DB search
MDFSKTTLYKRTRSCFDKFYLEYNEKKGYKRVRKDEGNREEDKTGKSSELGLKKVKIETD
GFFRKTETNLGKVSNKDDDDDVKLISKKCERKQIQSDVERVFVSAKGKKKFVKDSGAAAN
RDCSSGKKGLRETLKGVGKCLRTNDAHLTKSCGRDGKKDADVGFSGCEIDVESVLYLGDN
VSCLDNYDLSHCSRVESNEVKVSPVVELDSIWVDEDGDGSQTFKLSDDEKEDNSHQKTES
HEENNSVGKDMEPTEDDDDVTIASLSSSSDNDEDGSATDDEDSDYDNNEGTKNKNGTIVF
EPGVRKKKHDGGIDILGKAKEEGALKRRRTDDTDAFVPSVDEMGNQKAAGTTATIRKYDH
RFGNEFDVSKILTDTLREDGDGGDKLLRSYMISKEEPALDCSSPLKETPVKKFVRSHTFR
IKLDEEDIIKPESEVAVDKLFEEMNVNLQYLEMGCSSTTAVNCADDDKGVDKTRTSCREG
KHRLTLNEEFGIICRCCSYVEMEIRDILPPLSKNGTGGFGRHRYDDRTEDGMKFSDLPAA
NCSDARGTKYGDKGTVWDLVPGVKESMYPHQREGFEFIWKKIAGGTYIDKLEKRLPVGGS
GCIINHAPGTGKSRLTIVFLQAFLKMYPDARPVIVAPRSMLLTWEEEFKKWNVDFPFYNL
NSNECSGQEDAVALNVVKRFGNVRSIHCNRLLKLYSWNRKSSVLGITYRLFEILAGDEDG
RKRKKVPSSSEMKEILLQVPSLLVLDEGHTPRNDESLMWKALLNGNTNRRIILSGTPFQN
NFDELYNTLCLVNPLLLSFFGLSSTLRRNHRSGKKKARGQWDYSITSNSFKRSQPKIHEI
KAMVDPFVHVHKGTILQETLPGLRDALVVLKPTEMQQILLGKMFVGKSNLDMDHVRSLVS
IHPSLLPTNSVANKGRLFKMLKASKNNPNAGVKTNFLMELIKLSEALNEKVLVFCQFIKP
LKFLKKLFKTNFSWVEGRDFLYMDGQQEEKRRQNSISTLNDPKSEVKLLLASIKACSEGI
NLVGASRVVLLDVQWNPSVERQAISRAYRLGQKKVVYIYHLVTGSMEGDKYIRQVKKSHL
SELVFSSKNKEDGSGQPKISHHLQFMKIGF
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcaaagactacattgtataagcgaacacggtcttgttttgataaattttac
ttggagtataatgagaaaaagggttataagagggttcgcaaagatgaaggaaatagggag
gaggacaagactgggaaatcaagtgagctgggcttaaaaaaggtgaaaattgaaactgat
ggtttttttcgtaagacggagacaaatttggggaaagtttcgaacaaggatgatgatgat
gatgtgaagttgatcagtaagaagtgtgagaggaaacaaattcagtctgatgtggaacgg
gtttttgtaagtgctaaaggcaaaaaaaagttcgttaaggattctggtgccgcggcgaat
agggattgttcaagtgggaaaaaggggttgagggaaactttgaaaggtgttggtaagtgt
ttgaggacaaatgatgctcatttgacaaagagttgtgggagggacggcaagaaagatgct
gatgtaggtttcagtggctgtgagattgatgtcgaaagtgtattgtacttgggcgataat
gtatcatgtttggataattatgatctgtcgcattgttctcgtgtggaaagcaatgaggtg
aaggtgagtccagttgtggagctggactcgatttgggtagatgaggatggtgacggttca
cagacgtttaagttgtctgatgacgaaaaagaggataattctcatcagaagacggagtca
catgaagagaataatagcgttggaaaggacatggagccaactgaggatgatgatgatgtc
acaattgctagcttgagctcttcgagtgataatgatgaagatgggagcgccacggatgat
gaagatagcgattatgataataatgaagggacgaagaacaagaatggtactattgttttt
gagcccggggttcgtaaaaagaagcatgatggtgggattgatattttagggaaagctaag
gaggagggtgctttaaagagaaggaggactgacgacactgatgcttttgtgccatcagtt
gatgaaatgggcaaccaaaaggctgcagggacgacggccactattagaaagtatgatcat
cggtttggaaatgaatttgatgtgtctaagattctcacagatactttaagagaggatggg
gatggtggagataagctgctcagaagttatatgatttctaaagaggaaccagctctagac
tgcagtagtcctctaaaagaaacccctgttaagaaatttgttcggtcacatacgtttaga
attaaactcgacgaggaagatataataaagccagaaagtgaggttgcagtggataagctt
ttcgaggaaatgaacgtgaacttacagtatttagaaatgggatgctctagcactactgcg
gttaattgtgctgatgacgacaaaggagtggataaaacaaggacctcttgtcgcgaagga
aaacatcgactaactcttaatgaagagtttgggattatctgtagatgttgctcttatgtt
gagatggaaataagagatattttacctcctctgagtaaaaatgggacgggcgggtttggc
aggcatagatatgatgatagaacagaggacggcatgaagttttctgaccttccagccgct
aactgcagtgatgccagagggactaagtatggcgataaagggacagtttgggacttggtt
cccggggttaaagaatccatgtatccacatcaacgcgagggttttgagttcatttggaaa
aaaatagctggtggtacctacattgataagttggaaaaacgtcttcctgttggtggaagt
ggatgcataatcaaccatgcccctggaactggaaaaagccggctcacaatcgtttttctc
caggcgtttttgaaaatgtatccggatgcgaggccagtgattgtcgctcctcgttctatg
ctgctcacttgggaagaagaatttaaaaaatggaatgttgattttccgttttataacttg
aacagtaacgaatgttctggacaggaagatgcagtggcgttaaatgttgtaaaacgattt
gggaatgtaagaagtatacattgtaaccgtttgttgaagttatattcctggaatagaaaa
tcaagcgttttggggatcacgtatagattgtttgaaatcctagctggtgatgaagatggc
cggaagagaaaaaaagtgccgtcgagcagtgagatgaaggaaattctgcttcaagttcct
agtcttttagtacttgatgaagggcacactccccggaatgatgaaagtcttatgtggaag
gcgttgctaaacggaaacacaaataggagaatcattctgtctggaactcccttccagaac
aatttcgatgagttgtataataccctctgcttggtaaatcccttactactgtcgttcttt
gggttgtcgtcgactttaagaaggaatcacaggtctggcaaaaagaaggcaagagggcaa
tgggattattctatcacaagtaattctttcaaaaggagtcaaccgaaaatccatgaaatt
aaagccatggttgacccttttgtccatgtgcataagggaacaattcttcaagaaacgctt
cccggtttaagggatgctctggttgttttaaagcccactgaaatgcagcaaatacttctt
ggaaagatgtttgtgggaaaatcgaatctagatatggaccatgttagatcattagtatcc
attcatccttcactgctccccacaaactctgttgctaacaagggtcgtttatttaaaatg
cttaaagcgtcaaaaaacaaccctaatgctggagttaagactaatttcttgatggaactt
attaagctcagtgaagcactaaatgagaaggttttagtcttttgtcagttcatcaagcca
ttgaaatttttaaagaaacttttcaaaactaacttcagctgggttgaaggaagggatttc
ttgtacatggatggacaacaagaagagaagcgtagacaaaactcaattagtacacttaac
gatcctaaaagtgaagttaagttacttcttgcatctattaaggcatgttccgaagggatt
aatttggtaggcgcatcaagagttgtgttgctcgatgttcaatggaatccgtctgtggag
agacaagctataagccgggcatacagactaggtcaaaagaaagttgtttatatttaccat
cttgtaacaggatcaatggagggtgataaatatattaggcaggttaagaagagtcatttg
tcagaattggtcttttcctccaagaacaaagaagacggttcgggtcagcctaaaatatca
catcatctacagtttatgaagatcggattttag
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integrated database retrieval system
