Erigeron canadensis (horseweed): 122597668
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Entry
122597668 CDS
T07610
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122597668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122597668
Membrane trafficking [BR:
ecad04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122597668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
Clathrin
TPR_Vps41
TPR_VPS8_2
Beta-prop_EML_2
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WDR55
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
ANAPC4_WD40
WD40_Gbeta
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_EML
Beta-prop_Aladin
Motif
Other DBs
NCBI-GeneID:
122597668
NCBI-ProteinID:
XP_043626179
LinkDB
All DBs
Position
1:52421747..52432875
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AA seq
1845 aa
AA seq
DB search
MELDLDAFLQSHDATTSDDEDTYHHSAVDELLNIDSDDASSPSSSSRSNGLSSPQSNSNS
IDSFSLDSQLVTDRDVPAIQSKFRSISGINSGDTSSVSRQLSLPLFGSNAKPGAAVAAAA
AASRSIPSPHAAAIKLRRERFIRLSLDPKASIGSEILSGSGTSSEIGNSDTNIVEGDFKL
DNLETENIVSSGEVITEHESKNRWGDGFPSEETKADVDNAFEAGRFEIDVGDDTLNPVTK
SEIGSLLNDQGLDLDKDGSMPVIDDDSDDRIEGNDLESATISTLQYVEGVVPFAHGNVDD
NEVEEDSISVLSERNDFESTKTHANDVDFGLQAGGDVSVEKGGIDLDQGSEKRDRETPGT
SSPSLKPLQFAEELEKKHAFTGLHWEEGAAAQPMKLEGVHRGSTVLGYLSTSSDNIITKT
ISSPAFKRDHGTPQSLAVHLNYIAVGMSRGVIVIFPSKYSLHLADNIDTKLLILGLQGDR
SYAPVTSMSFNQQGDLLFAGYADGHYSVWDVQRVSVAKIVTEHKAPVVHMLYMGMDSQVA
RQFNIISGDSKGVVKLIRFSTSSWLNRFSTSKTSTLLDESTRTVVCASPLLSGRSSAGTN
AGTSGIGSMMGVVPGDPSSAEEGVVIFVTHQSGLVAKVVSSIPEVYAQLPKPDGVREGSM
PYTAWKYIAENVEPLLAIAWDSQVQVAKLVKSELKIYATWTLDSSAVGVAWLDSQMLVVL
TSAGQLCLYANDGTLIHDTSYAVDGCRIGELIGYHTFFTNVSGNSEKAHHNCIAVRGASL
YLLGPTHLVVSRLLPWKERIEVLRKGGDWMGAFNMAMMLYDGQAHGVFDLPTALDDVQMA
VMPYLVELLLAYVDEVFSYISVALGNQAENAGNLDDSKDDSFSMTSKIKEQYTHVGGVAV
EVCVHIKRNDILFEKILSRFESVQQKETFLELLEPYILKDMLGSLPPEIMQALVEHYSTK
GWLQRVEQCVLHMDISSLDFNQVFRLCREHSLYGALIYLFNKGLDDFRTPLEELLRVFRN
NDSESAPSLGYRMLVYLKYCFSGYAFPPGHGALSPARLPSLREELISLLLEDSNAPSSWG
LTNLSSTEGYKNLYYLLELDTEATLDVLRCAIIDENPSHNSAADKDSASPSQDLIQKTVN
VLALIPEKGKSTSIEDIQPNTNWPSKVDIDHILDFISHFVACKKVKVSNRLLSQIFEHLT
LEADIPHNVERKHGDCFLRREKEVLALLNVVPETDWDDKYLLNMCEKAHFYQVCGFIHNS
KHRYLAALDSFMKDIDEPIHAFFYIDYLMSDKRSDILEAAVISRIPDLVQLSREGTLFLV
IERFFQDFQQILADLRSNLGSLFLYLKTVMEIHSTGTMRFDFLKKGEPLCFPGARVHDFL
ERISEFPKFLRENPVHVTDEMTELYLELLCQYEPNSVLHYLETCESYRVDQCLRLCQEHG
IIDAAAYLLEKTGDVGSALSFTLSDLADKFSMLGAAAQSVNDYAGLDHLDEFLKKKEVTD
ILYIVHTCVALCQRNSSRLDPNESEALWFQLLDTFCEPLTNPCIDKMDSEQKLQRRQQNG
EAFGIKWKIRGSDKGARILRKLFSMFIKEMVEGMIGYVRLPTVMMKLLSDNGSQEFGDFK
ATILGLLGTYDFERRILDTARSLIEDDAYYTMSLLKRGASHGHGPRSLVCCICNCLLTTA
IRVYNCGHASHLHCEIPASHRALSTGCPICMPKKKGSVPDKNGLVSKPLPKHRLTQGTGA
VHVHENDRQLSRYEILTNLDKDKRMIQVDNMPQLRLAPPAVYHEKVKKGVAMSRGDGGSN
TSGIAKIEKTKMGKAIKDRKKKGSAARFSLKSNIFGKENSYLSSQ
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgatctagatgccttcctgcaatcacacgacgccacgaccagtgacgatgaa
gatacctaccatcacagcgctgtcgatgagcttctcaatattgactccgatgatgcttct
tctccttcatcatcttcccgatcgaatggcttaagcagcccccaaagcaacagtaattca
atcgattctttttctcttgattcccaattggtaactgatagggatgtaccggcaattcag
tcaaagttccgttccattagcggaataaattcaggcgatacatctagtgtttcacgccaa
ttatctcttccgttatttggttcaaatgctaagcccggggctgcagtggcagccgctgcg
gcagcttcacgatcgattccgtcgccacatgcggctgctatcaaactgaggagggagaga
tttattaggctaagcttggatccgaaagctagtattggctctgagatactttctggaagt
ggcacaagttcagaaattgggaattcagatacaaatatagtcgaaggagattttaaactg
gataatttggaaaccgaaaatattgtatctagtggggaagtgattactgaacatgaaagt
aaaaacaggtggggtgatggtttcccaagtgaagaaacaaaagcagatgtagataatgca
ttcgaagcaggtaggtttgagattgatgttggtgatgatactctcaaccctgttactaaa
tccgagataggttctcttttgaatgaccaaggtcttgatttggataaggatggttccatg
ccagttatagatgatgacagtgatgaccgcattgagggcaatgatttggagtcagccact
atctctaccttacagtatgtagagggggtggtcccttttgcccatgggaatgtggatgat
aacgaggttgaggaggactcgataagtgtactgtcagaaagaaatgattttgaaagtaca
aaaacacatgcaaatgatgtggattttggccttcaagctggcggtgatgtttcagtcgaa
aagggtggtattgatctggatcaaggaagtgagaagagagacagagagacaccagggacg
tcatccccctccttgaaaccccttcaatttgccgaggagcttgaaaagaagcatgcgttt
acaggtttgcattgggaagagggtgcagctgcacaaccaatgaagcttgagggtgttcac
agaggatcaactgtgttgggttatctgagtactagtagcgataacatcatcactaagact
atttcttcgccagcatttaagcgagaccatggaactccacagtcgctagccgttcatctg
aactacattgccgtggggatgtcaagaggggtgattgttatattccccagcaaatactct
ctacatcttgctgataacatcgacactaagttgttaattcttggattacaaggtgatagg
tcttatgccccagtcacatccatgtccttcaaccagcaaggagacctcctttttgcagga
tatgctgatgggcattatagtgtttgggatgtccagagggtttctgttgcaaaaattgtt
actgaacataaagctccagtagtgcacatgttatatatgggaatggattctcaagtggca
cgccagttcaacataataagtggtgatagcaaaggtgtggttaagttgatccgcttttct
acatcttcatggctcaataggttctcaacttctaaaacctcgactcttcttgatgaatca
acacgcacagttgtatgtgcttctcccctactgtccggacgttcttctgccggcaccaac
gctggaacgagtggcataggaagcatgatgggagtagttccaggagacccatcttctgct
gaagaaggcgtggtcatatttgtcactcatcaatctggtctagtggcaaaagtggtatct
agcatcccagaagtctatgctcaacttcctaagcctgatggtgtccgagagggttccatg
ccttatactgcatggaaatacattgctgagaatgtagaaccgctgttagcaattgcttgg
gattcccaagtgcaggttgcaaaattggtgaaatcagaactgaagatatatgcaacatgg
accctcgacagttcggcagtaggggttgcttggctggatagtcagatgttggtggtgcta
acatcagctggacaactctgtctgtatgcaaatgatgggactctaattcatgacacaagt
tatgctgtagatggatgcagaattggggaactcattggatatcacaccttttttaccaat
gtttcaggcaactcagagaaagctcatcacaactgtatagctgttaggggtgcttctctg
tatctacttggacctacacatcttgttgtctctcgccttctcccatggaaggaacgcata
gaagttttacgcaaaggcggtgactggatgggggctttcaacatggcaatgatgctttat
gatggtcaagcccatggtgtttttgatcttcctacagctttggatgatgtgcaaatggca
gtaatgccctacctagtggagttgctactcgcatatgtagatgaggtcttttcttatata
tcggtggcattaggcaaccaagctgaaaacgcggggaacttggatgattcaaaggatgat
agtttttccatgacgtcaaagataaaagagcagtacacccatgttggtggagttgccgtt
gaggtttgtgtacacatcaagagaaatgacatcctctttgagaaaattttatcacggttt
gaatctgttcaacagaaagagacatttttggagcttttggaaccatatatattgaaggac
atgcttgggtcgctaccacccgagattatgcaagcactggtggagcattatagtacaaaa
ggttggctgcagcgtgttgaacaatgtgttctccacatggacatttcttccttggacttc
aatcaggtgttcaggttatgtcgggaacacagcttatatggagccctgatatatttgttc
aataaaggtctagatgatttcaggacacctttagaggagctgcttcgggtatttagaaac
aatgatagtgagagtgctccatcacttgggtacaggatgctcgtttatttgaagtactgc
ttttcgggatatgcttttcctccgggacatggagctctttctcctgcacgtttgccatct
cttagagaggagctgataagcttgttactggaagattccaacgctccaagttcatggggt
ttgacaaatttatcatccactgaaggatacaagaatctatattatctcctagagttggat
accgaagcaactttggatgttttgagatgtgcaattatagatgaaaatccttcgcacaat
tcggcagctgataaggactctgcatccccaagtcaagatctgatccaaaagaccgtcaat
gttcttgctctcatacctgaaaagggcaaatctactagcattgaggatattcaacctaac
acaaattggccttcaaaggttgatatagatcatatacttgacttcatatctcattttgtt
gcctgtaaaaaggtcaaagtctcaaatcgattgctaagtcagatattcgagcatttgaca
ttagaggctgacattccacataatgttgaaaggaaacatggagattgctttttaagaaga
gaaaaggaggtcctagcacttttgaatgttgtgccggagacagattgggatgataaatac
ttgttaaacatgtgtgagaaggctcacttttatcaggtctgtggcttcattcataacagc
aaacaccgatatttagctgctcttgatagcttcatgaaagatatagatgaaccaattcat
gcttttttctatatcgattatttgatgagtgacaagaggtctgatattttggaagctgca
gtcatttcacgcattccagatttagttcaattaagcagagagggcacactttttcttgtt
attgaacgtttttttcaagatttccaacaaatcctagctgatctgaggtctaacctggga
agtctcttcctctaccttaaaacagttatggaaattcattcaacaggcaccatgaggttc
gattttctaaaaaaaggagaacctctgtgttttcctggggcaagagtacatgatttctta
gaaagaatttccgagttcccaaagtttttgcgtgagaatccagttcatgtaactgatgaa
atgactgagctgtatcttgagttgctatgtcaatatgaacccaattctgtcctccattac
cttgagacctgtgaaagctatagggtagaccaatgtttacgcttgtgccaagaacatgga
atcatagatgctgctgcttacttattagaaaagactggggacgttggaagtgctctttca
ttcacactttctgatcttgcagataaatttagtatgcttggtgctgctgctcaaagtgta
aatgattatgctgggttagatcatcttgatgagttcttgaagaagaaggaggtaactgat
atactatatatcgtgcatacttgtgttgcattgtgccaaagaaacagctctcggttggat
cctaatgagtccgaggccctctggtttcagctgctcgacacattttgtgaacccttgaca
aatccatgcattgataagatggattctgagcaaaaacttcagagaaggcagcaaaatgga
gaagcattcggaatcaagtggaagatcagagggtcagataaaggtgctcgaatcttgagg
aaattattctctatgtttattaaagaaatggttgagggaatgataggatatgtccggtta
ccgaccgtcatgatgaaacttctttctgataacggtagccaagagtttggtgattttaag
gctaccatactaggattgcttggaacatatgattttgaaagaagaattttggacactgct
cgatctttaatcgaggatgacgcatattataccatgagcttacttaagagaggagcttct
catggtcatggcccacggagccttgtttgttgtatatgtaattgtcttcttacaactgcg
attcgagtttacaattgtgggcatgcaagccatttgcattgcgagatacctgcctcgcat
agagctttgtctacaggttgccccatttgtatgccaaagaaaaagggctcagtccctgac
aagaatggattagtgagtaagcctttaccaaaacataggttaacacaagggacaggtgct
gttcacgtacatgagaatgatcgccaattatcaaggtatgaaatattgactaatcttgat
aaagacaagaggatgatacaagtagataacatgccacagctgaggcttgcaccaccagct
gtgtatcatgaaaaggtgaagaaaggcgtagctatgtcgaggggagacggtggtagcaat
accagtggtattgctaagattgaaaaaactaagatgggcaaggcaattaaagatcggaaa
aagaagggatcagctgctcgattttccttgaaatcaaacatatttggcaaggaaaattcg
tacctgtcatctcaatag
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