KEGG   Erigeron canadensis (horseweed): 122597724
Entry
122597724         CDS       T07610                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03020  RNA polymerase
ecad03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122597724
  09124 Replication and repair
   03420 Nucleotide excision repair
    122597724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecad03021]
    122597724
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122597724
Transcription machinery [BR:ecad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     122597724
  RNA polymerase III system
   RNA polymerase III
     122597724
  RNA polymerase I system
   RNA polymerase I
     122597724
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122597724
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C Homeobox_KN Mrr_cat
Other DBs
NCBI-GeneID: 122597724
NCBI-ProteinID: XP_043626224
LinkDB
Position
4:complement(43348264..43350878)
AA seq 228 aa
MSLPDEEITKLHRVRKTCFEMLKDRGYEIEDSEINMTRKEFIDKYNGTIQREDLTFLKTK
PDNSDPIYVFFPDDLKIGVKIIKNYVLRMESEKIRRAIIVVRIGMTPSAKACQAEIAGRF
RVEVFQEAELLVNIRYHDLVPEHVPITEQEKVELLQKYNMKAAQIQSQFPRILHTDPIAR
YYGLSRGQVVKILRPIETGTSEKDKDDFDSNKRDRNAEICYVSYRVVS
NT seq 687 nt   +upstreamnt  +downstreamnt
atgtcgttaccggatgaagagatcacgaagctgcatagagttcgaaaaacgtgctttgaa
atgctgaaagaccgtggctatgagattgaggattctgaaataaacatgacaagaaaggaa
ttcattgacaagtataacgggaccattcaaagggaggatcttacttttctgaaaactaaa
ccagacaacagtgatccgatttatgttttctttcccgatgatctgaagattggtgtaaag
ataatcaagaattatgtacttcgtatggaaagtgagaagatacgaagagcaattatagtt
gttcgaattgggatgactcctagtgccaaggcatgccaggctgagatagcaggaaggttt
cgagtggaagttttccaggaggcggagctgctagttaacatcagatatcatgatcttgtt
cctgagcatgttccaattacagaacaagaaaaggtcgaattgctccaaaaatacaacatg
aaagcagcacagatccaatcgcagtttcctcgaatattgcatacagatccaattgccaga
tactacgggttaagtcgtggtcaagttgtcaaaattctgagaccaatcgagacaggaacg
agtgagaaagacaaggatgattttgactccaacaaaagagatcgtaatgcagagatctgt
tatgtaagctacagggtagtttcctga

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