Erigeron canadensis (horseweed): 122597799
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Entry
122597799 CDS
T07610
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122597799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122597799
03036 Chromosome and associated proteins [BR:
ecad03036
]
122597799
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122597799
Coactivators
SAGA/TFTC/STAGA complex
122597799
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122597799
STAGA complex
122597799
TFTC complex
122597799
SAGA complex
122597799
SLIK complex
122597799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
122597799
NCBI-ProteinID:
XP_043626306
LinkDB
All DBs
Position
4:36207950..36214028
Genome browser
AA seq
740 aa
AA seq
DB search
MSIVPKETVEVIAQSIGINNLSLDGALALAPDVEYRMREIMQEGIKCMHHSRRTTLTSDD
IDSALSMRNVEPLYGFASGDPLRFKRALGHKDLFYIDDKDVDFKEVIEAPLPKAPLDTSL
FCHWLAIEGVQPAIPENASIEVIAALPETKKPERKSDELPVDIRFPVKHVLSRELQLYLT
KITELALNMPDSVLFKEALMSLATDSGLHPLVPYFTCFIEDEVKVSLGLNNFRLLFALMR
LVWSLLQNPHLHIERYLHQLMPPVVSCIVAKRLGNRIADNHWELRDFTAKLVATICKRFG
HNYSSLQTRLTKTFLNSFLDRKRSLTQHYGSVQGLAALGPHVVRLLLLPNLEAYLGFLEE
IFKNTKKETTRYEAWRVYGALLRAAGRSIYDLLKFFPVLPSPPPSSVLKTNLKVISTQET
RKRKVNAEELEQQPSPKRRITDGPLVSQSDNNIMTRDVRDKNAANVGESDDNTVTKDVQD
KTSDNTTMIEDVEEKISNSMTEDVQDKPSNTTMTEDVQDKTSNTTMTEDVQDKTCDTTMT
EDVQDKTSDTTMTEDVQDKTSDTTMTEDVQDKTSNATMAEDVQDKTSNNNSMAVDVQDKT
SNHNTMTLDVEDKMSNHNPMTHDVEDKISNHNTMTQDVEDKISNHNTMTQDVQDKNAADV
DSSKAETSSAREQMADDGVKDMNGRKGRGNRNNHGTRTPAYLKQVWKDDLNSGQLVISLF
ELFGEGIMSFIPAPEMSLFL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgtaccaaaggagaccgttgaggtcatagcacagagcattggcataaacaat
ttatctctagatggtgcattggcgcttgctcctgatgtagaatatcgtatgcgggaaatt
atgcaggaggggattaaatgcatgcatcattcaagaaggactacattgacctcagatgat
attgatagtgcacttagtatgcgaaatgttgagccactctatggatttgcatctggagat
cctttgcgtttcaagagagcccttgggcacaaagatttattctatatagatgacaaggat
gtggattttaaagaggtgatagaagccccattaccaaaagcaccactggatacttccctt
ttctgtcattggctggcaattgaaggggtacaaccagcgattccagaaaatgcttctatt
gaagttattgcggctttaccagagactaaaaagcctgagcgaaagagtgatgagctgcct
gtagatattagattccctgtaaagcatgtcttatctagagagcttcagctatacctcacc
aaaattaccgagcttgcattaaacatgcctgattctgttctttttaaggaagcactaatg
agtttggctacagactctggactgcatcctttagtaccttactttacatgctttatcgaa
gatgaggtaaaggtttctcttggtcttaataatttccggcttctctttgctttaatgcgg
cttgtttggagtcttctccagaatccacacttacatattgaacgttatttgcaccaattg
atgccacctgttgttagctgtattgttgcaaaaaggttaggaaatcgaattgctgataat
cactgggagcttagagactttactgccaaacttgtggctactatatgtaaaagatttggg
cataactatagtagtctccagacccgtttgactaaaacatttcttaattcatttttggat
cggaaacggtcattgacacaacattatggttctgttcaaggactagctgctcttggacct
catgtggttcgccttcttcttttgccaaatcttgaggcatatttaggctttcttgaagaa
atctttaagaacacaaaaaaggaaacgacaagatatgaagcttggcgtgtatatggtgca
ctgttgcgtgccgcaggaagatctatttatgatctgctcaagtttttcccggttttacca
tccccacctccaagttctgttttgaagaccaatctgaaggttattagtacacaagaaaca
cgtaaacgcaaggttaatgcagaagagttggaacagcagccatctccaaagagaaggatt
actgatggacctttggtttcacagtctgataacaacatcatgactcgagatgtccgagac
aaaaatgctgctaatgttggtgaatccgatgacaacactgtgacaaaagatgtccaagac
aaaacgtctgataacaccacaatgatagaagacgtcgaagaaaaaatttctaacagcatg
acagaagatgttcaagacaaaccgtctaacaccaccatgacagaagatgtccaagacaag
acgtctaataccaccatgacagaagatgtccaagacaaaacgtgtgacaccaccatgaca
gaagatgtccaagacaaaacgtctgacaccaccatgacagaagatgtccaagacaaaacg
tctgacaccaccatgacagaagatgtccaagacaaaacgtctaacgctacaatggcagaa
gatgtccaagacaaaacgtctaataacaactccatggcagtagatgtccaagacaaaaca
tctaatcacaacaccatgacacttgatgtcgaagacaaaatgtccaatcacaaccccatg
acacatgatgttgaagacaagatatcaaatcacaacaccatgacacaagatgttgaagac
aagatatcaaatcacaacaccatgacacaagatgtccaggacaaaaatgctgccgatgtt
gattcatcaaaggcggaaacttcatctgctcgagaacaaatggctgatgatggtgttaaa
gacatgaatggaagaaaaggtaggggtaaccgtaataaccatggaacgagaacaccagca
tatcttaagcaggtttggaaagatgatctgaattcaggacaacttgttatttcactattt
gaactgtttggggaagggatcatgtccttcattccagctcctgagatgtctctgtttcta
taa
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