Erigeron canadensis (horseweed): 122597896
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Entry
122597896 CDS
T07610
Name
(RefSeq) vacuolar sorting protein 3-like isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122597896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122597896
Membrane trafficking [BR:
ecad04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122597896
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Vps39_1
Clathrin
TPR_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
122597896
NCBI-ProteinID:
XP_043626415
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All DBs
Position
4:complement(24576705..24587582)
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AA seq
980 aa
AA seq
DB search
MATKPMIKSRSILEPISQFNLSSSSSIRSLSLFSPNSHIYVGTLSGNLILLSINSNNGKY
EVKYVRHMLVSDCEVESIHIFSEIEKLLVVSDGFIHFLDFELLKPVKKISALKGVSVVAR
RFRSNGYGPFSKLSVGNGEAGDRVGGSGFLQRFGGSGGGGRANGGGNDLPIDDNCVFVAA
VGKKLVIVGLVGRSEENSYSSVAGSLVTLKEIVCVDVVKDVVWVDDSIVVGCSSGYYLCS
CVTGQCGLIFSLPDVSSTPRLKVLKKDYKVLMMVDNVAIIVDLHGQPVGGSLVFHGSPDG
IGELGSSVVAIRSGKMELYVKKTGNCVQKIVVAEGGGRCVITDDEDGTGKMVVVATSDKV
ICYLKVPAEEQIKDFLRKKDFTEATSLAEELHDDGDITRETFSLVHAQVGFLLMFDLHFE
EAVNHFLLSETLQPSEIFPFIMPDPNRWSLLVPRNRYWGLHPPPSPLESVIDNGIMAIQR
AIFLKKVGMETAVDDEFLLNLPNRDDLLNSAITNLIRYLKASREKDLTSSVREGVDTLLM
YLYRALNLVDEMEGLASSENWCIVEELEKLLNDSGHLRTLAFLCESKGMSYKALAIWRIL
ARNYSSGYWKDPTQTNKKQEVGVNLISGKETAATEASRILEKLSDQDLILQHLGWIADIN
QVLVVQVLTSEKRSHQLSPEEVIAAIDPKKTEILQRYLQWLIEDQDSDDPQFHTSYALLL
TNSALETYETESPSKKINDLQAERHSIFQNPVRERLQVFLQSSDLYDPEEVLVLIEESEL
WMEKAIVYRKLGQETLVLQILAVKLEDNNAAEHYCAEIGRPDAYMQLLDIYLNPTDGKKP
MFKAAVRLLHNHGESLDPLQVLERLSPNMPLQLASDTILKMLRARCHHHYQGQVVHRLSR
AVNVDANLARLEERSRLVQINDESQCDSCHARLGTKLFAMYPDDTIVCYKCFRRLGESTS
VTGRDFNNDPVFKPGWLVTD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacccatgatcaaatctcgctcaattttagaacccatttcacaattcaat
ctatcttcatcatcatcaattcgatctttatcacttttttctccaaattcccatatctat
gttggcacactttctggtaatctcatcttactttctattaatagtaataatggaaaatat
gaagttaaatatgtaaggcatatgttagttagtgattgtgaagtagaatctatacatata
tttagtgaaattgagaagcttttagttgtttcagatgggtttatacattttcttgatttt
gagttacttaagcctgttaaaaagattagtgctttgaaaggtgttagtgttgttgctagg
aggtttaggagtaatgggtatggcccgttttcgaagttgtccgtggggaatggcgaggcc
ggggaccgggttggtgggtcgggttttttgcaaaggtttggtggtagtggtggtggtggg
agggcgaatggtggtgggaatgatttgcctattgatgataattgtgtttttgtggcggcg
gttgggaagaagttggttatagtgggacttgttggtaggagtgaggagaatagttatagt
agtgttgcagggtcacttgtgacgttgaaagagatagtatgtgttgatgtagttaaggat
gtggtttgggttgatgattcgattgttgttggttgttcgagtggttactatttgtgttcg
tgtgttacgggtcaatgtgggttgatattttcgttgccggatgtgtctagtacgccacgg
cttaaggttttaaagaaagattataaggttcttatgatggttgataatgttgcgattatt
gttgatttacacgggcaaccggttggtggaagtttggtgtttcatggatctccagatggt
attggtgaattggggtcgagtgtggttgctattcgcagtgggaagatggagttgtatgtt
aagaaaacggggaattgtgttcagaaaattgtggtcgccgaggggggcggtcggtgtgtt
ataacagatgatgaagatggaactggaaagatggtggtggttgcaacatcagacaaggtt
atttgctacttgaaagtacctgctgaagaacaaattaaggattttttgagaaagaaggat
ttcacggaggctacttccttagctgaggagcttcatgatgatggtgatattaccagggaa
actttctcacttgttcatgctcaagtaggattcttgttgatgtttgacttgcattttgag
gaagcagtgaatcactttctactatctgaaacacttcagccttctgaaatatttccattc
atcatgccagatccaaaccgttggtcattactggtacctaggaatcgttattggggttta
caccctccaccttcccctcttgagagtgttattgacaatggaataatggctattcaaaga
gccatctttcttaaaaaagtaggaatggagacagccgtggatgatgagtttcttttgaat
cttccaaatagagatgatttattgaactccgcaatcacaaatttaatcaggtatttaaaa
gcttcacgtgagaaagacctgacatcctctgtcagggagggagttgacacactattaatg
tatctctatagagctttgaatcttgtcgatgaaatggaggggcttgcatcttctgaaaac
tggtgtatagtggaggagttggaaaagttactgaatgattcggggcatttaaggacactt
gctttcctttgtgaaagcaaagggatgagctacaaggcccttgcaatttggagaatattg
gcaagaaactattcatctggctactggaaggaccctacacaaacaaacaaaaagcaagaa
gtaggtgtaaatcttatctcaggcaaagagactgcagccactgaagcttcaaggattctt
gagaaactatctgaccaagatctgatactgcaacatcttggatggattgcagatatcaac
caggtgcttgttgttcaagtgttgacatctgaaaaacggagtcatcaactttcaccagaa
gaagtaattgctgcaattgatccaaagaaaaccgagattcttcagagatatcttcagtgg
ttgattgaagatcaagactctgatgatcctcagttccatacatcatatgctctgttactt
accaactcagcacttgaaacttatgaaactgaaagtccatcgaagaagatcaacgattta
caggcagaaaggcattcgatattccaaaatccggttagagagagattacaagtcttttta
caatcttcggacttgtatgatcctgaagaggttcttgttttgattgaagaatcggagtta
tggatggagaaggctattgtttatcgaaaactagggcaagaaacattggtgctccaaatc
ctggccgtgaaattggaggacaataacgctgctgaacactattgtgccgaaattggtaga
ccagatgcctatatgcagttgcttgatatctatctaaaccccacagatggcaagaagcca
atgttcaaagctgctgttcggcttcttcataatcatggagaatcacttgatcctctgcaa
gttcttgagagattatccccaaatatgcctttacaacttgcttctgatacaatattaaaa
atgctaagagctcgttgtcatcatcattatcaaggacaagttgtccatcgtttatcccga
gctgttaacgttgacgcaaatttagcaagattagaggaaaggtcccgacttgtgcaaatt
aacgatgagagtcaatgtgattcttgtcacgcgagacttggaacaaagttatttgcaatg
tatcccgatgacaccatagtttgttacaagtgtttccgacgcctgggagagtccacatct
gtaacaggtcgtgacttcaataatgaccctgtcttcaaaccaggctggcttgttaccgac
tga
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