Erigeron canadensis (horseweed): 122598019
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Entry
122598019 CDS
T07610
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122598019
03015 mRNA surveillance pathway
122598019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122598019
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122598019
5.6.2.5 RNA 5'-3' helicase
122598019
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122598019
mRNA cycle factors
Common to processing body (P body) and stress granule
122598019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
PhoH
ATPase
SRP54
AAA_16
AAA_22
AAA_25
AAA_32
AAA
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
122598019
NCBI-ProteinID:
XP_043626562
LinkDB
All DBs
Position
1:complement(46164375..46174551)
Genome browser
AA seq
1272 aa
AA seq
DB search
MDSQPNNLFDTVSQPDTGDAYTFLEFNTQDDDNFNYTDFQELSQPTAATAGVVRSSPSSS
VWPTPSDSISIDTSAVAGDHRSDSNASPGSATSGKGGGGGGRGSNSNQAAAVDALAAGMS
GLNFEETAGGDEESYEYGKGELMEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGS
HIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCL
NVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARHISAQQINKVEELWKTNPD
ASLEDLEKPGVDDEPQPVAMKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWD
IGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHTAWQSVGHVIKLTAQEEVALEL
RASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHNLLGHEVEFQMV
RNALPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQG
QVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSE
LHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQV
LIDESTQSTEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLGV
KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMG
QEEISASGTSYLNRTEAAHVEKIVTAFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL
RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL
GNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGPGMG
ANESFGSATSGNPGADGRNNRSRGPYMPPGPPNGTHKPGLHPAAYPMPRVPIPPYHGGPQ
PYAIPTRGVHGPIGGIPHVPQPGSRGFTAGRGNPTSGPIGSHLTHQQGSQQPIGAPMGSN
FNFSALENPTSQSSVGGPGPLSQPGYVNNMTQGPGQTFRDGFSVGGMSQDFLGDDFKSQG
SHVPYNVAEFSTQASQGGYTVDYGNPTTQGGFPGSYLNQNSQAGYSRFGTGNDFMSQDYM
GHGSQGLFTQVGFNDPSQDDASQSHFGANSLQTQNMMNPLYSQPFAHYNSQPPNMQAPQQ
QQQQQTQPHYNG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggattcccaaccaaacaacttattcgacacggtgtctcaaccggacaccggcgacgct
tatacctttctcgaattcaacacacaagatgacgataacttcaattacaccgattttcaa
gagctttctcaaccaaccgccgccacggcaggcgtcgtcagatcgtctccgtcgtcatcc
gtttggcctacgccgtccgattctatctccatcgatacctctgccgtcgctggagatcac
cggtctgatagtaacgcgtctcctggctcagccacttccggaaagggcggaggtggtggt
ggaagaggaagtaatagtaatcaggcggcggcggtggatgcgttggccgcgggaatgagt
ggattgaattttgaagagacggcaggtggagatgaagaaagttatgagtatggaaaaggg
gaattgatggaacatgcttgtaggtattgtggtgtgcagaatccggcttgcgttgttcgg
tgtaatgttccttcttgtaggaaatggttttgtaattctagaggcaatacctccggttct
cacattgttaatcatctcgttagagccaaacataaagaagtgtgtcttcataaagatagt
cctttaggtgaaacaattcttgaatgctataactgtggatgtcgaaatgtttttcttctt
ggattcatttcagcaaagacagagagtgtggttgttctactttgcagggaaccttgtctc
aatgtgaatgcactgaaagacatgaattgggacctgagtcaatggtgtccgcttattgat
gatcgatgctttttgcaatggcttgttaaggttccatctgaacaggaacagctgcgggca
cgtcatataagtgcccaacagatcaataaggtggaagaactctggaagacaaatcctgat
gcgagcttggaggacctagaaaagcctggtgtcgatgatgagcctcaacctgtggccatg
aagtatgaagatgcctatcagtatcaaaatgtttttgcaccactcattaagcttgaagct
gattatgataaaatgatgaaagaatctcaaagcaaagacaatcttacaatacgatgggat
attggtcttaacaagaagcgtgttgcatattttgtttttccaaaggaagacaatgaattg
cgtcttgtgcctggtgatgagttacggctacgatactctggagatgctgcacatacagct
tggcagtcagttggacatgtgataaaactcactgcccaagaggaggtggcacttgagctt
cgtgcaagtcagggagttccggttgatgtgaaccatggctttagtgtggactttgtatgg
aagagcactagttttgataggatgcagggtgctatgaaaactttcgcggtggatgaaaca
agtgtcagcgggtacatttaccacaatttgttggggcatgaggttgagtttcaaatggtt
cgtaatgcattgcctcgccgttttggcgcacctggtcttcctgagcttaatgcatctcaa
gtttttgctgtaaaaagtgtccttcagaaaccaataagtttgatccaagggccacctggt
actgggaaaacagtcacttccgctgcaattgtttaccacatggctaaacaaggtcaagga
caggttttggtatgtgcacctagcaatgtcgccgtagaccaactcgcggagaagataagt
gccactggcttaaaggttgtaagactgtgtgctaaatcaagggaagctgttagctcacct
gttgagcacttaacacttcattatcaggttcgccatctggatacatctgaaaaaagcgaa
cttcacaagctgcagcaattgaaagatgaacaaggagaattatccagtagtgatgagaag
aagtataaggcactgaagcgggctactgaacgtgagatatctcaaagcgctgatgtcatc
tgttgcacatgtgttggtgctggagatcctcgattggcaaattttagatttcgtcaggtg
cttattgatgaatctacccaatcaactgagccagagtgtcttattcctcttgttctcggg
gcaaagcaggtggttcttgttggtgaccattgtcagcttggtcctgttattatgtgcaag
aaagctgcccgtgctgggttagctcaatctttatttgagcgacttgtgatgcttggtgtc
aagccaattagattgcaggttcaatatcgaatgcatccatcgctttcagaatttccttct
aatagtttttacgagggtactctccaaaacggagtcactatcaatgaaaggcaatcaaca
ggaattgattttccctggcccgtgccaaatcgccccatgttcttttatgttcagatggga
caagaagaaattagtgccagtggaacatcttatcttaataggaccgaggctgcacatgtt
gaaaagatagtgaccgctttcctaaggagtggtgtagttccaagtcagataggggttata
actccctatgaggggcagcgtgcatacattgttaactatatgtcgagaaatggtgcactt
aggcagcagctttataaggaaattgaggttgcaagtgtagattcatttcaagggcgggaa
aaagattacattattttgtcatgtgtgagaagtaatgaacatcagggtattggatttctt
aatgatccacgtaggcttaatgttgcacttacccgagctcgttatggtattgtcattctt
ggaaatccaaaagttctcagtaaacaaccattgtggaatgggttactaacacattataag
gagcatgaatgtttagtggaaggtcctttaaacaacttaaagcagagtatggtgcaattt
cagaagccaaagaaaatatataatgaccggaggcttttctttggtggacctggtatgggg
gccaatgagagctttggatctgctacttcaggaaatcctggtgctgatggcagaaacaac
cgttccaggggtccatacatgccacctggaccacctaatggcactcataaacctggtctt
catcctgctgcatatccaatgcctcgcgtgcctattccaccatatcatggaggtccccag
ccttatgctattcctacccgtggtgtacatggccccattggtggcattcctcatgttccg
cagcccggtagtcggggtttcaccgctggacggggaaatcctactagtggtcctattggg
agccatctcacacaccagcaaggctcacagcagcctattggtgcacccatgggatctaat
tttaacttctcagcacttgaaaacccaactagccagtcatcggttggtggacccggtcca
ttatctcaacctggatatgttaataatatgacgcaaggaccaggtcaaacgtttcgtgat
ggtttctcggttggtggcatgtcacaggattttttgggtgatgattttaaaagtcaaggg
tcgcatgttccatataatgttgctgaattttccacacaggcttctcaaggtgggtatact
gttgactatggtaatccaacaacccagggaggattcccgggaagctacttgaaccagaat
tcccaagctgggtattctcggtttggtacaggaaatgatttcatgtctcaggactacatg
ggtcacggctctcaaggcttgtttacacaggttgggttcaatgatccatcacaagatgat
gcttcccaaagccacttcggtgccaattctcttcagacacagaatatgatgaatcctcta
tactcccaaccatttgcacactataactcacagcccccaaacatgcaagctcctcaacag
cagcaacaacagcaaacacaaccccactacaatggttga
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